Evidence map›Paper›PMID 24121503›Full record

ArticleThe Journal of biological chemistry2013

Chemotype-selective modes of action of κ-opioid receptor agonists.

Eyal Vardy, Philip D Mosier, Kevin J Frankowski, Huixian Wu, Vsevolod Katritch, Richard B Westkaemper, Jeffrey Aubé, Raymond C Stevens, Bryan L Roth

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 69 citations in OpenAlex.

  1. Article
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  13. Article
  14. Review
  15. Ketamine Metabolite (2ACS chemical neuroscience · 2021
    Article
  16. Article
  17. Review
  18. A review of salvinorin analogs and their kappa-opioid receptor activity.Bioorganic & medicinal chemistry letters · 2018
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Eyal VardyFrom the Department of Pharmacology, University of North Carolina School of Medicine, Chapel Hill, North Carolina 27599.
Philip D Mosier
Kevin J Frankowski
Huixian Wu
Vsevolod Katritch
Richard B Westkaemper
Jeffrey Aubé
Raymond C Stevens
Bryan L Roth
Scripps Research Institute · USUniversity of Kansas · USUniversity of North Carolina at Chapel Hill · USVirginia Commonwealth University · US

Funding

Project 3U54GM094618 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI STEVENS, RAYMOND C · 2010 to 2014
$17.1M
Diterpines as Selective Kappa Opioid Receptor AgonistsR01DA017204 · NIDA · UNIV OF NORTH CAROLINA CHAPEL HILL · PI ROTH, BRYAN L. · 2003 to 2014
$3.2M
NIDA NIH HHS R01 DA017204NIGMS NIH HHS U54 GM094618
6 · The paper itself

Abstract

The crystal structures of opioid receptors provide a novel platform for inquiry into opioid receptor function. The molecular determinants for activation of the κ-opioid receptor (KOR) were studied using a combination of agonist docking, functional assays, and site-directed mutagenesis. Eighteen positions in the putative agonist binding site of KOR were selected and evaluated for their effects on receptor binding and activation by ligands representing four distinct chemotypes: the peptide dynorphin A(1-17), the arylacetamide U-69593, and the non-charged ligands salvinorin A and the octahydroisoquinolinone carboxamide 1xx. Minimally biased docking of the tested ligands into the antagonist-bound KOR structure generated distinct binding modes, which were then evaluated biochemically and pharmacologically. Our analysis identified two types of mutations: those that affect receptor function primarily via ligand binding and those that primarily affect function. The shared and differential mechanisms of agonist binding and activation in KOR are further discussed. Usually, mutations affecting function more than binding were located at the periphery of the binding site and did not interact strongly with the various ligands. Analysis of the crystal structure along with the present results provide fundamental insights into the activation mechanism of the KOR and suggest that "functional" residues, along with water molecules detected in the crystal structure, may be directly involved in transduction of the agonist binding event into structural changes at the conserved rotamer switches, thus leading to receptor activation.

Indexed as

Structure-Activity RelationshipAnalgesics, OpioidBinding SitesCrystallography, X-RayDynorphinsHEK293 CellsHumansLigandsMolecular Docking SimulationMutagenesis, Site-DirectedMutationProtein ConformationReceptors, Opioid, kappaAnalgesics, OpioidDynorphinsLigandsReceptors, Opioid, kappaG Protein-coupled Receptors (GPCR)Mutagenesis Site-specificOpiate OpioidPharmacologyReceptor Structure-Function

Identifiers

PMID24121503
PMCPMC3843062
OpenAlexW1998305432

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.