Evidence map›Paper›PMID 24121501›Full record

ArticleThe Journal of biological chemistry2013

A conserved protein with AN1 zinc finger and ubiquitin-like domains modulates Cdc48 (p97) function in the ubiquitin-proteasome pathway.

Bebiana Sá-Moura, Minoru Funakoshi, Robert J Tomko, R Jürgen Dohmen, Zhiping Wu, Junmin Peng, Mark Hochstrasser

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Role of Proteostasis Regulation in the Turnover of Stress Granules.International journal of molecular sciences · 2022
    Review
  5. Yeast PI31 inhibits the proteasome by a direct multisite mechanism.Nature structural & molecular biology · 2022
    Article
  6. Article
  7. Article
  8. Article
  9. The Proteasome and Its Network: Engineering for Adaptability.Cold Spring Harbor perspectives in biology · 2020
    Review
  10. Article
  11. Article
  12. ZFAND5/ZNF216 is an activator of the 26S proteasome that stimulates overall protein degradation.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Bebiana Sá-MouraDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520; Graduate Program in Areas of Basic and Applied Biology, Abel Salazar Biomedical Sciences Institute, University of Porto, Porto 4099-002, Portugal.
Minoru FunakoshiDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520.
Robert J TomkoDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520.
R Jürgen DohmenInstitute for Genetics, University of Cologne, Zülpicher Strasse 47, D-50674 Cologne, Germany.
Zhiping WuDepartments of Structural Biology and Developmental Neurobiology, St. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, Tennessee 38105.
Junmin PengDepartments of Structural Biology and Developmental Neurobiology, St. Jude Proteomics Facility, St. Jude Children's Research Hospital, Memphis, Tennessee 38105.
Mark HochstrasserDepartment of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520. Electronic address: mark.hochstrasser@yale.edu.

Funding

Function and Assembly of Eukaryotic ProteasomesR01GM083050 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 2008 to 2019
$3.8M
Degradation of Short Lived Regulatory Protein in YeastR37GM046904 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 2009 to 2018
$3.6M
DEGRADTION OF SHORT-LIVED REGULATORY PROTEINS IN YEASTR01GM046904 · NIGMS · YALE UNIVERSITY · PI HOCHSTRASSER, MARK W · 1992 to 2020
$3.6M
NIGMS NIH HHS GM046904NIGMS NIH HHS GM083050NIGMS NIH HHS R01 GM046904NIGMS NIH HHS R01 GM083050NIGMS NIH HHS R37 GM046904
6 · The paper itself

Abstract

Regulated protein degradation mediated by the ubiquitin-proteasome system (UPS) is critical to eukaryotic protein homeostasis. Often vital to degradation of protein substrates is their disassembly, unfolding, or extraction from membranes. These processes are catalyzed by the conserved AAA-ATPase Cdc48 (also known as p97). Here we characterize the Cuz1 protein (Cdc48-associated UBL/zinc finger protein-1), encoded by a previously uncharacterized arsenite-inducible gene in budding yeast. Cuz1, like its human ortholog ZFAND1, has both an AN1-type zinc finger (Zf_AN1) and a divergent ubiquitin-like domain (UBL). We show that Cuz1 modulates Cdc48 function in the UPS. The two proteins directly interact, and the Cuz1 UBL, but not Zf_AN1, is necessary for binding to the Cdc48 N-terminal domain. Cuz1 also associates, albeit more weakly, with the proteasome, and the UBL is dispensable for this interaction. Cuz1-proteasome interaction is strongly enhanced by exposure of cells to the environmental toxin arsenite, and in a proteasome mutant, loss of Cuz1 enhances arsenite sensitivity. Whereas loss of Cuz1 alone causes only minor UPS degradation defects, its combination with mutations in the Cdc48(Npl4-Ufd1) complex leads to much greater impairment. Cuz1 helps limit the accumulation of ubiquitin conjugates on both the proteasome and Cdc48, suggesting a possible role in the transfer of ubiquitylated substrates from Cdc48 to the proteasome or in their release from these complexes.

Indexed as

ProteolysisZinc FingersAdenosine TriphosphatasesCell Cycle ProteinsHumansMultiprotein ComplexesNucleocytoplasmic Transport ProteinsProteasome Endopeptidase ComplexProtein Structure, TertiarySaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsUbiquitinValosin Containing ProteinVesicular Transport ProteinsAdenosine TriphosphatasesCDC48 protein, S cerevisiaeCell Cycle ProteinsMultiprotein ComplexesNPL4 protein, S cerevisiaeNucleocytoplasmic Transport ProteinsProteasome Endopeptidase ComplexSaccharomyces cerevisiae ProteinsUbiquitinUFD1 protein, S cerevisiaeValosin Containing ProteinVesicular Transport ProteinsATPasesCdc48Cuz1ER-associated DegradationProteasomeUbiquitinYeastZinc Finger

Identifiers

PMID24121501
PMCPMC3837114

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.