Evidence map›Paper›PMID 24121351›Full record

ArticleJournal of synchrotron radiation2013

Crystal structure of human CK2α at 1.06 Å resolution.

Takayoshi Kinoshita, Tetsuko Nakaniwa, Yusuke Sekiguchi, Yuri Sogabe, Atsushi Sakurai, Shinya Nakamura, Isao Nakanishi

Open access · hybridAbstract read
In one paragraph

Article in Journal of synchrotron radiation, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Copper Modulates the Catalytic Activity of Protein Kinase CK2.Frontiers in molecular biosciences · 2022
    Article
  5. Article
  6. Crystal structure of Arabidopsis thaliana casein kinase 2 α1.Acta crystallographica. Section F, Structural biology communications · 2020
    Article
  7. A promiscuous kinase inhibitor delineates the conspicuous structural features of protein kinase CK2a1.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  8. Article
  9. Crystal structures of human CK2α2 in new crystal forms arising from a subtle difference in salt concentration.Acta crystallographica. Section F, Structural biology communications · 2018
    Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Takayoshi KinoshitaGraduate School of Science, Osaka Prefecture University, 1-1 Gakuen-cho, Naka-ku, Sakai, Osaka 599-8531, Japan.
Tetsuko Nakaniwa
Yusuke Sekiguchi
Yuri Sogabe
Atsushi Sakurai
Shinya Nakamura
Isao Nakanishi
Kindai University · JPOsaka Prefecture University · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Ser/Thr kinase CK2 consists of two catalytic subunits (CK2α) and a dimer of the regulatory subunits (CK2β), and is a ubiquitous enzyme that regulates growth, proliferation and the survival of cells. CK2 is a remarkable drug target for potentially treating a wide variety of tumours and glomerulonephritis. The purified CK2α protein was crystallized using ethylene glycol as a precipitant. The crystal structure of CK2α with 21 loci of alternative conformations, including a niacin, 19 ethylene glycols and 346 waters, was determined at 1.06 Å resolution to an Rwork of 14.0% (Rfree = 16.5%). The alternative ensemble in the internal hydrophobic core underpins the plasticity of the αD-helix responsible for the regulation of ATP/GTP binding. The clear density map indicates that a niacin molecule, contained in the Escherichia coli culture medium, binds to the ATP binding site. An ethylene glycol molecule binds in the hydrophobic pocket lateral to the αD-helix forming the rim of the active site. The other ethylene glycol molecules occupy physiologically significant sites, including the CK2β binding interface and substrate binding site, as well as the gap in the crystal packing. Together with water molecules in the active site, these structural insights should facilitate drug discovery.

Indexed as

Adenosine TriphosphateCasein Kinase IICatalytic DomainCrystallography, X-RayEscherichia coliEthylene GlycolGuanosine TriphosphateHumansModels, MolecularProtein ConformationAdenosine TriphosphateCasein Kinase IICSNK2A1 protein, humanEthylene GlycolGuanosine Triphosphatecatalytic subunitCK2 kinasehigh-resolution crystal structure

Identifiers

PMID24121351
PMCPMC3795567
OpenAlexW1975927557

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.