Evidence map›Paper›PMID 24120938›Full record

ArticleJournal of molecular biology2014

Structure of a prokaryotic sodium channel pore reveals essential gating elements and an outer ion binding site common to eukaryotic channels.

David Shaya, Felix Findeisen, Fayal Abderemane-Ali, Cristina Arrigoni, Stephanie Wong, Shailika Reddy Nurva, Gildas Loussouarn, Daniel L Minor

Abstract read
In one paragraph

Article in Journal of molecular biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 86 papers.

0numbers the graph read from it
0cells of the map it votes in
86citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

86 citing papers in PubMed.

  1. Article
  2. Deciphering CaProceedings of the National Academy of Sciences of the United States of America · 2025
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  8. Ion channel selectivity through ion-modulated changes of selectivity filter pProceedings of the National Academy of Sciences of the United States of America · 2023
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26 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

David ShayaCardiovascular Research Institute, University of California, San Francisco, CA 94158-9001, USA.
Felix FindeisenCardiovascular Research Institute, University of California, San Francisco, CA 94158-9001, USA.
Fayal Abderemane-AliInstitut National de la Santé et de la Recherche Médicale, UMR 1087, F-44000 Nantes, France; Centre National de la Recherche Scientifique, UMR 6291, F-44000 Nantes, France; L'institut du thorax, L'UNAM, Université de Nantes, F-44000 Nantes, France.
Cristina ArrigoniCardiovascular Research Institute, University of California, San Francisco, CA 94158-9001, USA.
Stephanie WongCardiovascular Research Institute, University of California, San Francisco, CA 94158-9001, USA.
Shailika Reddy NurvaCardiovascular Research Institute, University of California, San Francisco, CA 94158-9001, USA.
Gildas LoussouarnInstitut National de la Santé et de la Recherche Médicale, UMR 1087, F-44000 Nantes, France; Centre National de la Recherche Scientifique, UMR 6291, F-44000 Nantes, France; L'institut du thorax, L'UNAM, Université de Nantes, F-44000 Nantes, France.
Daniel L MinorCardiovascular Research Institute, University of California, San Francisco, CA 94158-9001, USA; Departments of Biochemistry and Biophysics and Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158-9001, USA; California Institute for Quantitative Biomedical Research, University of California, San Francisco, CA 94158-9001, USA; Physical Biosciences Science Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA. Electronic address: daniel.minor@ucsf.edu.

Funding

Structure and function of voltage-gated calcium channelsR01HL080050 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DANIEL L MINOR · 2005 to 2026
$9.8M
Structural Studies of Ion Channel Assembly and Signaling ComplexesR01DC007664 · NIDCD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI DANIEL L MINOR · 2005 to 2026
$8.2M
Project 6 (Holton)U54GM094625 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STROUD, ROBERT M · 2010 to 2014
$8.0M
NHLBI NIH HHS R01 HL080050NHLBI NIH HHS R01-HL080050NIDCD NIH HHS R01 DC007664NIDCD NIH HHS R01-DC007664NIGMS NIH HHS U54 GM094625NIGMS NIH HHS U54-GM094625
6 · The paper itself

Abstract

Voltage-gated sodium channels (NaVs) are central elements of cellular excitation. Notwithstanding advances from recent bacterial NaV (BacNaV) structures, key questions about gating and ion selectivity remain. Here, we present a closed conformation of NaVAe1p, a pore-only BacNaV derived from NaVAe1, a BacNaV from the arsenite oxidizer Alkalilimnicola ehrlichei found in Mono Lake, California, that provides insight into both fundamental properties. The structure reveals a pore domain in which the pore-lining S6 helix connects to a helical cytoplasmic tail. Electrophysiological studies of full-length BacNaVs show that two elements defined by the NaVAe1p structure, an S6 activation gate position and the cytoplasmic tail "neck", are central to BacNaV gating. The structure also reveals the selectivity filter ion entry site, termed the "outer ion" site. Comparison with mammalian voltage-gated calcium channel (CaV) selectivity filters, together with functional studies, shows that this site forms a previously unknown determinant of CaV high-affinity calcium binding. Our findings underscore commonalities between BacNaVs and eukaryotic voltage-gated channels and provide a framework for understanding gating and ion permeation in this superfamily.

Indexed as

Amino Acid SequenceBinding SitesCaliforniaCrystallography, X-RayEctothiorhodospiraceaeIonsLakesModels, MolecularProtein BindingProtein ConformationVoltage-Gated Sodium ChannelsWater MicrobiologyIonsVoltage-Gated Sodium ChannelsDDMEGTAelectrophysiologyethylene glycol-bis( 2-aminoethylether)-N, N,N′,N′-tetraacetic acidion bindingPDPEGpolyethylene glycolpore domainVGICvoltage-gated calcium channelvoltage-gated ion channelvoltage-gated sodium channelvoltage-sensing domainVSDX-ray crystallographyβ-dodecyl maltoside

Identifiers

PMID24120938
PMCPMC3947372

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.