Evidence map›Paper›PMID 24120139›Full record

ArticleCell2013

A polymorphic p53 response element in KIT ligand influences cancer risk and has undergone natural selection.

Jorge Zeron-Medina, Xuting Wang, Emmanouela Repapi, Michelle R Campbell, Dan Su, Francesc Castro-Giner, Benjamin Davies, Elisabeth F P Peterse, Natalia Sacilotto, Graeme J Walker and 7 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 3 pooled it
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 3 syntheses or guidelines pooled it, 121 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Review
  5. Article
  6. p53motifDB: integration of genomic information and tumour suppressor p53 binding motifs.Database : the journal of biological databases and curation · 2025
    Article
  7. Review
  8. Article
  9. Shared gene targets of the ATF4 and p53 transcriptional networks.bioRxiv : the preprint server for biology · 2023
    Article
  10. Article
  11. 27-year trends in incidence rates for testis cancer across a large statewide registry.American journal of clinical and experimental urology · 2023
    Article
  12. Structural Basis of Mutation-Dependent p53 Tetramerization Deficiency.International journal of molecular sciences · 2022
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Human population dynamics andScience advances · 2021
    Article
  19. Article
  20. Article

18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 3 countries.

Jorge Zeron-MedinaLudwig Institute for Cancer Research, Nuffield Department of Clinical Medicine, University of Oxford, Old Road Campus Research Building, Oxford OX3 7DQ, UK.
Xuting Wang
Emmanouela Repapi
Michelle R Campbell
Dan Su
Francesc Castro-Giner
Benjamin Davies
Elisabeth F P Peterse
Natalia Sacilotto
Graeme J Walker
Tamara Terzian
Ian P Tomlinson
Neil F Box
Nicolai Meinshausen
Sarah De Val
Douglas A Bell
Gareth L Bond
Ludwig Cancer Research · GBNational Institutes of Health · USUniversity of Oxford · GBCentre for Human Genetics · GBUniversity of Colorado Denver · USNational Institute of Environmental Health Sciences · USQIMR Berghofer Medical Research Institute · AU

Funding

Discovery And Functional Genomics Of Environmental Response GenesZIAES100475 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BELL, DOUGLAS · 2009 to 2025
$24.4M
Genetic Susceptibility To Carcinogens and ToxicantsZIAES046008 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BELL, DOUGLAS · 2009 to 2021
$7.8M
Transgenic and Gene Targeting CoreP30AR057212 · NIAMS · UNIVERSITY OF COLORADO DENVER · PI KOCH, PETER J. · 2009 to 2018
$6.2M
Discovery And Genetics Of Environmental Response GenesZ01ES100475 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BELL, DOUGLAS · 2002 to 2008
$2.9M
ISOLATION &CHARACTERIZATION OF GENES AFFECTING YEAST CHROMOSOME METABOLISMZ01ES065079 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI RESNICK, MICHAEL A · 1994 to 2008
$1.8M
INHERITED CANCER SUSCEPTIBILITY AND RELATION TO GENETIC DAMAGEZ01ES046008 · NIEHS · NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES · PI BELL, DOUGLAS · 1991 to 2008
$682k
Targeting p53-Dependent Repigmentation in VitiligoK01AR063203 · NIAMS · UNIVERSITY OF COLORADO DENVER · PI TERZIAN, TAMARA G · 2012 to 2016
$503k
British Heart Foundation PG/10/83/28610Intramural NIH HHS Z01 ES046008Intramural NIH HHS Z01 ES100475Intramural NIH HHS ZIA ES046008Intramural NIH HHS ZIA ES100475Medical Research Council MR/J007765/1NIAMS NIH HHS 1P30AR057212NIAMS NIH HHS 5K01AR063203NIAMS NIH HHS K01 AR063203NIAMS NIH HHS P30 AR057212Wellcome Trust 090532Wellcome Trust 090532/Z/09/Z
6 · The paper itself

Abstract

The ability of p53 to regulate transcription is crucial for tumor suppression and implies that inherited polymorphisms in functional p53-binding sites could influence cancer. Here, we identify a polymorphic p53 responsive element and demonstrate its influence on cancer risk using genome-wide data sets of cancer susceptibility loci, genetic variation, p53 occupancy, and p53-binding sites. We uncover a single-nucleotide polymorphism (SNP) in a functional p53-binding site and establish its influence on the ability of p53 to bind to and regulate transcription of the KITLG gene. The SNP resides in KITLG and associates with one of the largest risks identified among cancer genome-wide association studies. We establish that the SNP has undergone positive selection throughout evolution, signifying a selective benefit, but go on to show that similar SNPs are rare in the genome due to negative selection, indicating that polymorphisms in p53-binding sites are primarily detrimental to humans.

Indexed as

Genome-Wide Association StudyPolymorphism, Single NucleotideResponse ElementsAnimalsCell ProliferationGenetic Predisposition to DiseaseHumansMaleMiceSelection, GeneticStem Cell FactorTesticular NeoplasmsTranscription, GeneticTumor Suppressor Protein p53Stem Cell FactorTumor Suppressor Protein p53

Identifiers

PMID24120139
PMCPMC4171736
OpenAlexW2063475603

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.