Evidence map›Paper›PMID 24119404›Full record

ArticleMolecular cell2013

Structure of an RNA silencing complex of the CRISPR-Cas immune system.

Michael Spilman, Alexis Cocozaki, Caryn Hale, Yaming Shao, Nancy Ramia, Rebeca Terns, Michael Terns, Hong Li, Scott Stagg

Abstract readComparative StudyVideo-Audio Media
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.

0numbers the graph read from it
0cells of the map it votes in
73citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

73 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
  7. Structure of theCurrent research in structural biology · 2023
    Article
  8. Article
  9. Insights Gained from RNA Editing Targeted by the CRISPR-Cas13 Family.International journal of molecular sciences · 2022
    Review
  10. Review
  11. Article
  12. Review
  13. Review
  14. Efficient Genome Editing inMicroorganisms · 2020
    Article
  15. Article
  16. RNA-Targeting CRISPR-Cas Systems and Their Applications.International journal of molecular sciences · 2020
    Review
  17. Article
  18. Article
  19. Origins and evolution of CRISPR-Cas systems.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Review
  20. Article

13 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Michael SpilmanInstitute of Molecular Biophysics, Florida State University, Tallahassee, FL 32306, USA.
Alexis Cocozaki
Caryn Hale
Yaming Shao
Nancy Ramia
Rebeca Terns
Michael Terns
Hong Li
Scott Stagg

Funding

Small RNA-based immunity by CRISPR-Cas complexes of Pyrococcus furiosusR01GM054682 · NIGMS · UNIVERSITY OF GEORGIA (UGA) · PI TERNS, MICHAEL P, TERNS, REBECCA · 1997 to 2015
$4.8M
Structures of RNA Processing and Silencing Enzymes in ProkaryotesR01GM099604 · NIGMS · FLORIDA STATE UNIVERSITY · PI STROUPE, M. ELIZABETH · 2012 to 2023
$3.3M
NIGMS NIH HHS R01 GM054682NIGMS NIH HHS R01 GM099604NIGMS NIH HHS R01 GM54682NIGMS NIH HHS R01 GM99604
6 · The paper itself

Abstract

Bacterial and archaeal clustered regularly interspaced short palindromic repeat (CRISPR) loci capture virus and plasmid sequences and use them to recognize and eliminate these invaders. CRISPR RNAs (crRNAs) containing the acquired sequences are incorporated into effector complexes that destroy matching invader nucleic acids. The multicomponent Cmr effector complex cleaves RNA targets complementary to the crRNAs. Here, we report cryoelectron microscopy reconstruction of a functional Cmr complex bound with a target RNA at ~12 Å. Pairs of the Cmr4 and Cmr5 proteins form a helical core that is asymmetrically capped on each end by distinct pairs of the four remaining subunits: Cmr2 and Cmr3 at the conserved 5' crRNA tag sequence and Cmr1 and Cmr6 near the 3' end of the crRNA. The shape and organization of the RNA-targeting Cmr complex is strikingly similar to the DNA-targeting Cascade complex. Our results reveal a remarkably conserved architecture among very distantly related CRISPR-Cas complexes.

Indexed as

RNA InterferenceArchaeal ProteinsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsCryoelectron MicroscopyGene Expression Regulation, ArchaealModels, MolecularProtein ConformationProtein SubunitsPyrococcus furiosusRibonucleasesRNA, ArchaealStructure-Activity RelationshipArchaeal ProteinsCRISPR-Associated ProteinsProtein SubunitsRibonucleasesRNA, Archaeal

Identifiers

PMID24119404
PMCPMC3864027

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.