Evidence map›Paper›PMID 24119403›Full record

ArticleMolecular cell2013

Structure and activity of the RNA-targeting Type III-B CRISPR-Cas complex of Thermus thermophilus.

Raymond H J Staals, Yoshihiro Agari, Saori Maki-Yonekura, Yifan Zhu, David W Taylor, Esther van Duijn, Arjan Barendregt, Marnix Vlot, Jasper J Koehorst, Keiko Sakamoto and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 140 papers.

0numbers the graph read from it
0cells of the map it votes in
140citing papers in PubMed
13.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

140 citing papers in PubMed, 234 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Bio-protocol · 2025
    Article
  7. Article
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  16. Article
  17. Article
  18. Review
  19. Review
  20. CRISPR-based nucleic acid diagnostics for pathogens.Trends in analytical chemistry : TRAC · 2023
    Review

80 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Raymond H J Staals *Laboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6703 HB Wageningen, The Netherlands.
Yoshihiro Agari *RIKEN SPring-8 Center, 679-5148 Hyogo, Japan.
Saori Maki-Yonekura *RIKEN SPring-8 Center, 679-5148 Hyogo, Japan.
Yifan ZhuLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6703 HB Wageningen, The Netherlands.
David W TaylorDepartment of Molecular Biophysics and Biochemistry, Yale University School of Medicine, New Haven, CT 06520-8114, USA.
Esther van DuijnBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, 3584 CH Utrecht, The Netherlands.
Arjan BarendregtBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, 3584 CH Utrecht, The Netherlands.
Marnix VlotLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6703 HB Wageningen, The Netherlands.
Jasper J KoehorstLaboratory of Systems and Synthetic Biology, Wageningen University, 6703 HB Wageningen, The Netherlands.
Keiko SakamotoRIKEN SPring-8 Center, 679-5148 Hyogo, Japan.
Akiko MasudaGlobal Research Cluster, RIKEN, Saitama 351-0198, Japan.
Naoshi DohmaeGlobal Research Cluster, RIKEN, Saitama 351-0198, Japan.
Peter J SchaapLaboratory of Systems and Synthetic Biology, Wageningen University, 6703 HB Wageningen, The Netherlands.
Jennifer A DoudnaCalifornia Institute for Quantitative Biosciences, University of California, San Francisco, CA 94158-2330, USA.
Albert J R HeckBiomolecular Mass Spectrometry and Proteomics, Bijvoet Center for Biomolecular Research and Utrecht Institute for Pharmaceutical Sciences, University of Utrecht, 3584 CH Utrecht, The Netherlands.
Koji YonekuraRIKEN SPring-8 Center, 679-5148 Hyogo, Japan.
John van der OostLaboratory of Microbiology, Department of Agrotechnology and Food Sciences, Wageningen University, 6703 HB Wageningen, The Netherlands.
Akeo ShinkaiRIKEN SPring-8 Center, 679-5148 Hyogo, Japan.
Wageningen University & Research · NLSPring-8 · JPUtrecht University · NLRIKEN Center for Sustainable Resource Science · JPLawrence Berkeley National Laboratory · USQB3 · US

Funding

Structure and Function of RNAi-related NucleasesR01GM073794 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI DOUDNA, JENNIFER A · 2005 to 2013
$2.1M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM073794
6 · The paper itself

Abstract

The CRISPR-Cas system is a prokaryotic host defense system against genetic elements. The Type III-B CRISPR-Cas system of the bacterium Thermus thermophilus, the TtCmr complex, is composed of six different protein subunits (Cmr1-6) and one crRNA with a stoichiometry of Cmr112131445361:crRNA1. The TtCmr complex copurifies with crRNA species of 40 and 46 nt, originating from a distinct subset of CRISPR loci and spacers. The TtCmr complex cleaves the target RNA at multiple sites with 6 nt intervals via a 5' ruler mechanism. Electron microscopy revealed that the structure of TtCmr resembles a "sea worm" and is composed of a Cmr2-3 heterodimer "tail," a helical backbone of Cmr4 subunits capped by Cmr5 subunits, and a curled "head" containing Cmr1 and Cmr6. Despite having a backbone of only four Cmr4 subunits and being both longer and narrower, the overall architecture of TtCmr resembles that of Type I Cascade complexes.

Indexed as

Bacterial ProteinsClustered Regularly Interspaced Short Palindromic RepeatsCRISPR-Associated ProteinsHigh-Throughput Nucleotide SequencingMicroscopy, ElectronModels, MolecularProtein ConformationProtein SubunitsRibonucleasesRNA, BacterialSequence Analysis, RNASpectrometry, Mass, Electrospray IonizationStructure-Activity RelationshipThermus thermophilusBacterial ProteinsCRISPR-Associated ProteinsProtein SubunitsRibonucleasesRNA, Bacterial

Identifiers

PMID24119403
PMCPMC4006948
OpenAlexW2164532763

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.