Evidence map›Paper›PMID 24119184›Full record

ArticleMolecular ecology resources2014

A new multiplex SNP genotyping assay for detecting hybridization and introgression between the M and S molecular forms of Anopheles gambiae.

Yoosook Lee, Clare D Marsden, Catelyn Nieman, Gregory C Lanzaro

Open access · bronzeAbstract read
In one paragraph

Article in Molecular ecology resources, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Patterns of Gene Flow inEvolutionary applications · 2024
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  11. Mitochondrial genomes ofF1000Research · 2018
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  12. Article
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  14. Review
  15. A multi-detection assay for malaria transmitting mosquitoes.Journal of visualized experiments : JoVE · 2015
    Article
  16. Adaptive introgression in an African malaria mosquito coincident with the increased usage of insecticide-treated bed nets.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Article
  17. Article
  18. Article
  19. Article
  20. Spatiotemporal dynamics of gene flow and hybrid fitness between the M and S forms of the malaria mosquito, Anopheles gambiae.Proceedings of the National Academy of Sciences of the United States of America · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Yoosook LeeVector Genetics Laboratory, Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California - Davis, Davis, CA, 95616, USA.
Clare D Marsden
Catelyn Nieman
Gregory C Lanzaro
University of California, Davis · US

Funding

An.gambiae immune signaling gene SNPs and natural P. falciparum infectionR01AI078183 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LANZARO, GREGORY C., LUCKHART, SHIRLEY · 2010 to 2014
$3.2M
Population genomics of Mosquito An. gambiae in AfricaR01AI040308 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI LANZARO, GREGORY C. · 1996 to 2006
$1.5M
Ecology and Genetics of An. gambiae on IslandsR21AI062929 · NIAID · UNIVERSITY OF CALIFORNIA AT DAVIS · PI LANZARO, GREGORY C. · 2009 to 2010
$415k
NIAID NIH HHS R01 AI040308NIAID NIH HHS R01 AI078183NIAID NIH HHS R01AI078183NIAID NIH HHS R01AI40308NIAID NIH HHS R21 AI062929NIAID NIH HHS R21AI062929
6 · The paper itself

Abstract

The M and S forms of Anopheles gambiae have been the subject of intense study, but are morphologically indistinguishable and can only be identified using molecular techniques. PCR-based assays to distinguish the two forms have been designed and applied widely. However, the application of these assays towards identifying hybrids between the two forms, and backcrossed hybrids in particular, has been problematic as the currently available diagnostic assays are based on single locus and/or are located within a multicopy gene. Here, we present an alternative genotyping method for detecting hybridization and introgression between M and S molecular forms based on a multilocus panel of single-nucleotide polymorphisms (SNPs) fixed between the M and S forms. The panel of SNPs employed is located in so-called islands of divergence leading us to describe this method as the 'Divergence Island SNP' (DIS) assay. We show this multilocus SNP genotyping approach can robustly and accurately detect F1 hybrids as well as backcrossed individuals.

Indexed as

ChimeraPolymorphism, Single NucleotideAnimalsAnophelesGenotyping TechniquesInbreedingecological geneticshybridizationinsectspopulation genetics - empiricalspeciation

Identifiers

PMID24119184
PMCPMC3947471
OpenAlexW2027459222

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.