Evidence map›Paper›PMID 24116213›Full record

ArticlePloS one2013

The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus.

Sourabh Dhingra, Abigail L Lind, Hsiao-Ching Lin, Yi Tang, Antonis Rokas, Ana M Calvo

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
3.5field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 68 citations in OpenAlex.

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  12. Research Progress in Mutagenesis Techniques forMini reviews in medicinal chemistry · 2025
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  13. Review
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  15. A Timeline of Biosynthetic Gene Cluster Discovery inJournal of fungi (Basel, Switzerland) · 2024
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  17. Review
  18. Synthetic and systems biotechnology · 2022
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  19. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Sourabh DhingraDepartment of Biological Sciences, Northern Illinois University, DeKalb, Illinois, United States of America.
Abigail L Lind
Hsiao-Ching Lin
Yi Tang
Antonis Rokas
Ana M Calvo
Northern Illinois University · USUniversity of California, Los Angeles · USVanderbilt University · USVanderbilt University Medical Center · US

Funding

Vanderbilt Biomedical Informatics Training ProgramT15LM007450 · NLM · VANDERBILT UNIVERSITY · PI Jessica S. Ancker, Bradley A. Malin · 2002 to 2026
$19.7M
Rediscovering Natural Chemical Diversity -1DP1GM106413DP1GM106413 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI TANG, YI · 2012 to 2016
$3.9M
Study of the veA Gene in the Human Pathogen Aspergillus fumigatusR03AI079496 · NIAID · NORTHERN ILLINOIS UNIVERSITY · PI WANG, BAOHUA · 2011 to 2012
$145k
NIAID NIH HHS R03 AI079496NIAID NIH HHS R03AI079496NIGMS NIH HHS DP1 GM106413NLM NIH HHS 2T15LM007450NLM NIH HHS T15 LM007450
6 · The paper itself

Abstract

Aspergillus fumigatus is the causative agent of invasive aspergillosis, leading to infection-related mortality in immunocompromised patients. We previously showed that the conserved and unique-to-fungi veA gene affects different cell processes such as morphological development, gliotoxin biosynthesis and protease activity, suggesting a global regulatory effect on the genome of this medically relevant fungus. In this study, RNA sequencing analysis revealed that veA controls the expression of hundreds of genes in A. fumigatus, including those comprising more than a dozen known secondary metabolite gene clusters. Chemical analysis confirmed that veA controls the synthesis of other secondary metabolites in this organism in addition to gliotoxin. Among the secondary metabolite gene clusters regulated by veA is the elusive but recently identified gene cluster responsible for the biosynthesis of fumagillin, a meroterpenoid known for its anti-angiogenic activity by binding to human methionine aminopeptidase 2. The fumagillin gene cluster contains a veA-dependent regulatory gene, fumR (Afu8g00420), encoding a putative C6 type transcription factor. Deletion of fumR results in silencing of the gene cluster and elimination of fumagillin biosynthesis. We found expression of fumR to also be dependent on laeA, a gene encoding another component of the fungal velvet complex. The results in this study argue that veA is a global regulator of secondary metabolism in A. fumigatus, and that veA may be a conduit via which chemical development is coupled to morphological development and other cellular processes.

Indexed as

Gene Expression Regulation, FungalMultigene FamilyAspergillosisAspergillus fumigatusCyclohexanesFatty Acids, UnsaturatedFungal ProteinsGene DeletionGenes, FungalHumansSesquiterpenesCyclohexanesFatty Acids, UnsaturatedfumagillinFungal ProteinsSesquiterpenes

Identifiers

PMID24116213
PMCPMC3792039
OpenAlexW2001217529

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.