Evidence map›Paper›PMID 24116166›Full record

ArticlePloS one2013

Elucidation of substrate specificity in Aspergillus nidulans UDP-galactose-4-epimerase.

Sean A Dalrymple, John Ko, Inder Sheoran, Susan G W Kaminskyj, David A R Sanders

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. UDP-Glucose 4-Epimerase and β-1,4-Galactosyltransferase from the OysterInternational journal of molecular sciences · 2018
    Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Sean A DalrympleDepartment of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan, Canada.
John Ko
Inder Sheoran
Susan G W Kaminskyj
David A R Sanders
University of Saskatchewan · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

The frequency of invasive fungal infections has rapidly increased in recent years. Current clinical treatments are experiencing decreased potency due to severe host toxicity and the emergence of fungal drug resistance. As such, new targets and their corresponding synthetic pathways need to be explored for drug development purposes. In this context, galactofuranose residues, which are employed in fungal cell wall construction, but are notably absent in animals, represent an appealing target. Herein we present the structural and biochemical characterization of UDP-galactose-4-epimerase from Aspergillus nidulans which produces the precursor UDP-galactopyranose required for galactofuranose synthesis. Examination of the structural model revealed both NAD(+) and UDP-glucopyranose were bound within the active site cleft in a near identical fashion to that found in the Human epimerase. Mutational studies on the conserved catalytic motif support a similar mechanism to that established for the Human counterpart is likely operational within the A. nidulans epimerase. While the K m and k cat for the enzyme were determined to be 0.11 mM and 12.8 s(-1), respectively, a single point mutation, namely L320C, activated the enzyme towards larger N-acetylated substrates. Docking studies designed to probe active site affinity corroborate the experimentally determined activity profiles and support the kinetic inhibition results.

Indexed as

Amino Acid SequenceAspergillus nidulansBiocatalysisCatalytic DomainCrystallography, X-RayFungal ProteinsHumansKineticsModels, MolecularMolecular Sequence DataMolecular StructureNADPoint MutationProtein BindingProtein Structure, SecondaryProtein Structure, TertiaryFungal ProteinsNADUDPglucose 4-EpimeraseUridine Diphosphate Glucose

Identifiers

PMID24116166
PMCPMC3792076
OpenAlexW1987506875

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.