Evidence map›Paper›PMID 24116070›Full record

ArticlePloS one2013

Alternative mRNA splicing generates two distinct ADAM12 prodomain variants.

Sara Duhachek-Muggy, Hui Li, Yue Qi, Anna Zolkiewska

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Sara Duhachek-MuggyDepartment of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas, United States of America.
Hui Li
Yue Qi
Anna Zolkiewska
Kansas State University · US

Funding

ADAM12 in Breast Tumor Initiating CellsR01CA172222 · NCI · KANSAS STATE UNIVERSITY · PI ZOLKIEWSKA, ANNA · 2013 to 2016
$1.2M
Structure-Function Analysis of Breast Cancer-Associated Mutations in ADAM12R15CA151065 · NCI · KANSAS STATE UNIVERSITY · PI ZOLKIEWSKA, ANNA · 2010 to 2010
$444k
NCI NIH HHS R01 CA172222NCI NIH HHS R01CA172222NCI NIH HHS R15 CA151065NCI NIH HHS R15CA151065
6 · The paper itself

Abstract

Human ADAM12, transcript variant 1 (later on referred to as Var-1b), present in publicly available databases contains the sequence 5'-GTAATTCTG-3' at the nucleotide positions 340-348 of the coding region, at the 3' end of exon 4. The translation product of this variant, ADAM12-Lb, includes the three amino acid motif (114)VIL(116) in the prodomain. This motif is not conserved in ADAM12 from different species and is not present in other human ADAMs. Currently, it is not clear whether a shorter variant, Var-1a, encoding the protein version without the (114)VIL(116) motif, ADAM12-La, is expressed in human. In this work, we have established that human mammary epithelial cells and breast cancer cells express both Var-1a and Var-1b transcripts. Importantly, the proteolytic processing and intracellular trafficking of the corresponding ADAM12-La and ADAM12-Lb proteins are different. While ADAM12-La is cleaved and trafficked to the cell surface in a manner similar to ADAM12 in other species, ADAM12-Lb is retained in the ER and is not proteolytically processed. Furthermore, the relative abundance of ADAM12-La and ADAM12-Lb proteins detected in several breast cancer cell lines varies significantly. We conclude that the canonical form of transmembrane ADAM12 is represented by Var-1a/ADAM12-La, rather than Var-1b/ADAM12-Lb currently featured in major sequence databases.

Indexed as

Alternative SplicingADAM12 ProteinADAM ProteinsCell LineDatabases, GeneticHumansMembrane ProteinsProtein TransportRNA, MessengerADAM12 ProteinADAM12 protein, humanADAM ProteinsMembrane ProteinsRNA, Messenger

Identifiers

PMID24116070
PMCPMC3792144
OpenAlexW2040430740

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.