Evidence map›Paper›PMID 24115442›Full record

ArticleScience (New York, N.Y.)2013

An erythroid enhancer of BCL11A subject to genetic variation determines fetal hemoglobin level.

Daniel E Bauer, Sophia C Kamran, Samuel Lessard, Jian Xu, Yuko Fujiwara, Carrie Lin, Zhen Shao, Matthew C Canver, Elenoe C Smith, Luca Pinello and 8 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 394 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
394citing papers in PubMed, 3 pooled it
28.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

394 citing papers in PubMed, 3 syntheses or guidelines pooled it, 650 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Article
  6. Article
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  10. Review
  11. Review
  12. Article
  13. Genetic influences on haematopoiesis.Nature reviews. Genetics · 2026
    Review
  14. Article
  15. Article
  16. Thalassaemia.Nature reviews. Disease primers · 2026
    Review
  17. Review
  18. Review
  19. Article
  20. Article

334 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 7 institutions in 1 country.

Daniel E BauerDivision of Hematology/Oncology, Boston Children's Hospital, Boston, MA 02115, USA.
Sophia C Kamran
Samuel Lessard
Jian Xu
Yuko Fujiwara
Carrie Lin
Zhen Shao
Matthew C Canver
Elenoe C Smith
Luca Pinello
Peter J Sabo
Jeff Vierstra
Richard A Voit
Guo-Cheng Yuan
Matthew H Porteus
John A Stamatoyannopoulos
Guillaume Lettre
Stuart H Orkin
Harvard University · USBoston Children's Hospital · USUniversity of Washington · USHarvard University Press · USPalo Alto University · USDana-Farber Cancer Institute · USHoward Hughes Medical Institute · US

Funding

TRANSCRIPTION FACTOR GATA-1 IN TERMINAL ERYTHROID DEVELOPMENTP01HL032262 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI YIEN, YVETTE Y · 1985 to 2021
$38.9M
CORE--ZEBRAFISHP30DK049216 · NIDDK · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1999 to 2015
$14.3M
A Comprehensive Catalog of Dnasel Hypersensitive SitesU54HG007010 · NHGRI · UNIVERSITY OF WASHINGTON · PI STAMATOYANNOPOULOS, JOHN A · 2012 to 2016
$12.4M
MOLECULAR ANALYSIS OF NORMAL AND TYHALASSEMIC DNAR01HL032259 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI ORKIN, STUART H · 1985 to 2022
$8.8M
Toward a systematic understanding of targeting mechanisms for epigenetic factorsR01HG005085 · NHGRI · DANA-FARBER CANCER INST · PI YUAN, GUO-CHENG · 2011 to 2014
$1.7M
Epigenetic regulation of BCL11A in the hemoglobin switchK08DK093705 · NIDDK · BOSTON CHILDREN'S HOSPITAL · PI BAUER, DANIEL EVAN · 2012 to 2016
$679k
CIHR 123382Howard Hughes Medical InstituteNHGRI NIH HHS R01 HG005085NHGRI NIH HHS U54HG004594NHGRI NIH HHS U54 HG007010NHGRI NIH HHS U54HG007010NHLBI NIH HHS P01 HL032262NHLBI NIH HHS P01HL032262NHLBI NIH HHS R01 HL032259NHLBI NIH HHS R01HL032259NIDDK NIH HHS K08 DK093705NIDDK NIH HHS K08DK093705NIDDK NIH HHS P30 DK049216NIDDK NIH HHS P30DK049216
6 · The paper itself

Abstract

Genome-wide association studies (GWASs) have ascertained numerous trait-associated common genetic variants, frequently localized to regulatory DNA. We found that common genetic variation at BCL11A associated with fetal hemoglobin (HbF) level lies in noncoding sequences decorated by an erythroid enhancer chromatin signature. Fine-mapping uncovers a motif-disrupting common variant associated with reduced transcription factor (TF) binding, modestly diminished BCL11A expression, and elevated HbF. The surrounding sequences function in vivo as a developmental stage-specific, lineage-restricted enhancer. Genome engineering reveals the enhancer is required in erythroid but not B-lymphoid cells for BCL11A expression. These findings illustrate how GWASs may expose functional variants of modest impact within causal elements essential for appropriate gene expression. We propose the GWAS-marked BCL11A enhancer represents an attractive target for therapeutic genome engineering for the β-hemoglobinopathies.

Indexed as

Enhancer Elements, GeneticGene Expression RegulationAnimalsCarrier ProteinsCell Line, TumorCells, CulturedChromatinChromatin ImmunoprecipitationChromosome MappingErythroid CellsFetal HemoglobinGene TargetingGenetic EngineeringGenetic VariationGenome-Wide Association StudyHemoglobinopathiesBCL11A protein, humanCarrier ProteinsChromatinFetal HemoglobinNuclear ProteinsRepressor ProteinsTranscription Factors

Identifiers

PMID24115442
PMCPMC4018826
OpenAlexW2008989169

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.