Evidence map›Paper›PMID 24114446›Full record

ArticleCurrent genetics2013

Yeast nutrient transceptors provide novel insight in the functionality of membrane transporters.

Joep Schothorst, Harish Nag Kankipati, Michaela Conrad, Dieter R Samyn, Griet Van Zeebroeck, Yulia Popova, Marta Rubio-Texeira, Bengt L Persson, Johan M Thevelein

Open access · hybridAbstract read
In one paragraph

Article in Current genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 29 citations in OpenAlex.

  1. Review
  2. Article
  3. Future opportunities in solute carrier structural biology.Nature structural & molecular biology · 2024
    Review
  4. Article
  5. Review
  6. Article
  7. Phosphate in Virulence ofJournal of fungi (Basel, Switzerland) · 2020
    Review
  8. The yeast HeLife · 2018
    Article
  9. HJournal of bioenergetics and biomembranes · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Joep SchothorstLaboratory of Molecular Cell Biology, Institute of Botany and Microbiology, KU Leuven, Leuven, Belgium.
Harish Nag Kankipati
Michaela Conrad
Dieter R Samyn
Griet Van Zeebroeck
Yulia Popova
Marta Rubio-Texeira
Bengt L Persson
Johan M Thevelein
KU Leuven · BELinnaeus University · SEVIB-KU Leuven Center for Microbiology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the yeast Saccharomyces cerevisiae several nutrient transporters have been identified that possess an additional function as nutrient receptor. These transporters are induced when yeast cells are starved for their substrate, which triggers entry into stationary phase and acquirement of a low protein kinase A (PKA) phenotype. Re-addition of the lacking nutrient triggers exit from stationary phase and sudden activation of the PKA pathway, the latter being mediated by the nutrient transceptors. At the same time, the transceptors are ubiquitinated, endocytosed and sorted to the vacuole for breakdown. Investigation of the signaling function of the transceptors has provided a new read-out and new tools for gaining insight into the functionality of transporters. Identification of amino acid residues that bind co-transported ions in symporters has been challenging because the inactivation of transport by site-directed mutagenesis is not conclusive with respect to the cause of the inactivation. The discovery of nontransported agonists of the signaling function in transceptors has shown that transport is not required for signaling. Inactivation of transport with maintenance of signaling in transceptors supports that a true proton-binding residue was mutagenised. Determining the relationship between transport and induction of endocytosis has also been challenging, since inactivation of transport by mutagenesis easily causes loss of all affinity for the substrate. The use of analogues with different combinations of transport and signaling capacities has revealed that transport, ubiquitination and endocytosis can be uncoupled in several unexpected ways. The results obtained are consistent with transporters undergoing multiple substrate-induced conformational changes, which allow interaction with different accessory proteins to trigger specific downstream events.

Indexed as

Models, MolecularProtein ConformationAmino Acid SequenceAmino Acid Transport SystemsCyclic AMP-Dependent Protein KinasesEndocytosisMembrane Transport ProteinsMolecular Sequence DataMutagenesis, Site-DirectedPhosphatesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionSodiumUbiquitinationAmino Acid Transport SystemsCyclic AMP-Dependent Protein KinasesGAP1 protein, S cerevisiaeMembrane Transport ProteinsPhosphatesSaccharomyces cerevisiae ProteinsSodium

Identifiers

PMID24114446
PMCPMC3824880
OpenAlexW1971629000

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.