Evidence map›Paper›PMID 24114119›Full record

ArticleBiopolymers2014

Structural adaptation of tooth enamel protein amelogenin in the presence of SDS micelles.

Karthik Balakrishna Chandrababu, Kaushik Dutta, Sowmya Bekshe Lokappa, Moise Ndao, John Spencer Evans, Janet Moradian-Oldak

Abstract read
In one paragraph

Article in Biopolymers, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Quarterly intrinsic disorder digest (April-May-June, 2014).Intrinsically disordered proteins · 2017
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Amelogenin and Enamel Biomimetics.Journal of materials chemistry. B
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Karthik Balakrishna ChandrababuDivision of Biomedical Sciences, Center for Craniofacial Molecular Biology, University of Southern California, School of Dentistry, Los Angeles, CA, 90033.
Kaushik Dutta
Sowmya Bekshe Lokappa
Moise Ndao
John Spencer Evans
Janet Moradian-Oldak
University of Southern California · USNew York University · USNew York Structural Biology Center · US

Funding

MATRIX-BASED MINERAL (MBM) ENAMEL BIOMIMETICSR01DE013414 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI Janet Oldak · 2001 to 2026
$8.6M
Bio-Organic Biomedical Mass Spectromy ResourceP41GM103481 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BURLINGAME, ALMA L · 2012 to 2015
$6.4M
900 MHz NMR Spectrometer for Structural BiologyP41GM066354 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI COWBURN, DAVID · 2002 to 2006
$4.7M
INTRINSICALLY DISORDERED PROTEINS IN BIOMINERALIZATIONR01DE020099 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OLDAK, JANET · 2009 to 2013
$2.0M
EXTRAMURAL RESEARCH FACILITIES CONSTRUCTIONC06RR015495 · NCRR · NEW YORK STRUCTURAL BIOLOGY CENTER · PI RIFKIND, RICHARD A · 2000 to 2000
$2.0M
MATRIX BASED MINERAL ENAMEL-BIOMIMETICSR56DE013414 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI OLDAK, JANET · 2018 to 2018
$387k
NCI NIH HHS CO6RR015495NCRR NIH HHS C06 RR015495NIDCR NIH HHS DE-013414NIDCR NIH HHS DE-020099NIDCR NIH HHS R01 DE013414NIDCR NIH HHS R01 DE020099NIDCR NIH HHS R56 DE013414NIGMS NIH HHS P41 GM066354NIGMS NIH HHS P41GM066354NIGMS NIH HHS P41 GM103481
6 · The paper itself

Abstract

Amelogenin, the major extracellular matrix protein of developing tooth enamel is intrinsically disordered. Through its interaction with other proteins and mineral, amelogenin assists enamel biomineralization by controlling the formation of highly organized enamel crystal arrays. We used circular dichroism (CD), dynamic light scattering (DLS), fluorescence, and NMR spectroscopy to investigate the folding propensity of recombinant porcine amelogenin rP172 following its interaction with SDS, at levels above critical micelle concentration. The rP172-SDS complex formation was confirmed by DLS, while an increase in the structure moiety of rP172 was noted through CD and fluorescence experiments. Fluorescence quenching analyses performed on several rP172 mutants where all but one Trp was replaced by Tyr at different sequence regions confirmed that the interaction of amelogenin with SDS micelles occurs via the N-terminal region close to Trp25 where helical segments can be detected by NMR. NMR spectroscopy and structural refinement calculations using CS-Rosetta modeling confirm that the highly conserved N-terminal domain is prone to form helical structure when bound to SDS micelles. Our findings reported here reveal interactions leading to significant changes in the secondary structure of rP172 upon treatment with SDS. These interactions may reflect the physiological relevance of the flexible nature of amelogenin and its sequence specific helical propensity that might enable it to structurally adapt with charged and potential targets such as cell surface, mineral, and other proteins during enamel biomineralization.

Indexed as

MicellesAmelogeninAmino Acid SequenceAnimalsCircular DichroismDental EnamelMolecular Sequence DataMutant ProteinsProtein Structure, SecondaryRecombinant ProteinsSodium Dodecyl SulfateSpectrometry, FluorescenceSus scrofaThermodynamicsTryptophanAmelogeninMicellesMutant ProteinsRecombinant ProteinsSodium Dodecyl SulfateTryptophanamelogeninCS-Rosettaenamelintrinsically disordered proteinSDS

Identifiers

PMID24114119
PMCPMC3947416
OpenAlexW1542723923

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.