Evidence map›Paper›PMID 24113765›Full record

ArticleJournal of computer-aided molecular design2013

ALOHA: a novel probability fusion approach for scoring multi-parameter drug-likeness during the lead optimization stage of drug discovery.

Derek A Debe, Ravindra B Mamidipaka, Robert J Gregg, James T Metz, Rishi R Gupta, Steven W Muchmore

Abstract read
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In one paragraph

Article in Journal of computer-aided molecular design, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Application of Artificial Intelligence and Machine Learning in Drug Discovery.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  2. Computer-aided drug discovery.F1000Research · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Derek A DebePlatform Informatics and Knowledge Management, R&D, AbbVie, Inc., Mail Stop 10-2, 1 N. Waukegan Road, North Chicago, IL, 60064, USA, Derek.debe@abbvie.com.
Ravindra B Mamidipaka
Robert J Gregg
James T Metz
Rishi R Gupta
Steven W Muchmore

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Automated lead optimization helper application (ALOHA) is a novel fitness scoring approach for small molecule lead optimization. ALOHA employs a series of generalized Bayesian models trained from public and proprietary pharmacokinetic, absorption, distribution, metabolism, and excretion, and toxicology data to determine regions of chemical space that are likely to have excellent drug-like properties. The input to ALOHA is a list of molecules, and the output is a set of individual probabilities as well as an overall probability that each of the molecules will pass a panel of user selected assays. In addition to providing a summary of how and when to apply ALOHA, this paper will discuss the validation of ALOHA's Bayesian models and probability fusion approach. Most notably, ALOHA is demonstrated to discriminate between members of the same chemical series with strong statistical significance, suggesting that ALOHA can be used effectively to select compound candidates for synthesis and progression at the lead optimization stage of drug discovery.

Indexed as

AlgorithmsDrug DesignDrug DiscoverySoftwareBayes TheoremBlood ProteinsCell SurvivalDrug Evaluation, PreclinicalHep G2 CellsHumansMutagenicity TestsPharmaceutical PreparationsProspective StudiesBlood ProteinsPharmaceutical Preparations

Identifiers

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.