Evidence map›Paper›PMID 24113528›Full record

ArticleJournal of structural biology2013

Understanding specificity of the mycosin proteases in ESX/type VII secretion by structural and functional analysis.

Jonathan M Wagner, Timothy J Evans, Jing Chen, Haining Zhu, Edith N G Houben, Wilbert Bitter, Konstantin V Korotkov

Open access · greenAbstract read
In one paragraph

Article in Journal of structural biology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. The Type VII Secretion System ofAnnual review of microbiology · 2021
    Article
  6. Review
  7. Modeling Tubercular ESX-1 Secretion Using Mycobacterium marinum.Microbiology and molecular biology reviews : MMBR · 2020
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Expression and production of solubleBiochemistry and biophysics reports · 2016
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Jonathan M WagnerDepartment of Molecular & Cellular Biochemistry and Center for Structural Biology, University of Kentucky, Lexington, KY 40536, USA.
Timothy J Evans
Jing Chen
Haining Zhu
Edith N G Houben
Wilbert Bitter
Konstantin V Korotkov
University of Kentucky · USAmsterdam UMC Location VUmc · NL

Funding

UNDERSTANDING THE MOLECULAR BASIS OF EPIGENETIC TRANSCRIPTIONAL SILENCINGP20RR020171 · NCRR · UNIVERSITY OF KENTUCKY · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 2004 to 2011
$16.5M
Center for Biomedical Research Excellence in the Molecular Basis of Human DiseaseP20GM103486 · NIGMS · UNIVERSITY OF KENTUCKY · PI LOUIS HERSH, LOUIS HERSH LOUIS HERSH · 2012 to 2013
$4.2M
LTQ Orbitrap XL ETD mass spectrometerS10RR029127 · NCRR · UNIVERSITY OF KENTUCKY · PI ZHU, HAINING · 2010 to 2010
$908k
NCRR NIH HHS P20 RR020171NCRR NIH HHS P20RR020171NCRR NIH HHS S10 RR029127NCRR NIH HHS S10RR029127NIGMS NIH HHS P20 GM103486NIGMS NIH HHS P20GM103486
6 · The paper itself

Abstract

Mycobacteria use specialized ESX secretion systems to transport proteins across their cell membranes in order to manipulate their environment. In pathogenic Mycobacterium tuberculosis there are five paralogous ESX secretion systems, named ESX-1 through ESX-5. Each system includes a subtilisin-like protease (mycosin or MycP) as a core component essential for secretion. Here we report crystal structures of MycP1 and MycP3, the mycosins expressed by the ESX-1 and ESX-3 systems, respectively. In both mycosins the putative propeptide wraps around the catalytic domain and does not occlude the active site. The extensive contacts between the putative propeptide and catalytic domain, which include a disulfide bond, suggest that the N-terminal extension is an integral part of the active mycosin. The catalytic residues of MycP1 and MycP3 are located in a deep active site groove in contrast with an exposed active site in majority of subtilisins. We show that MycP1 specifically cleaves ESX-1 secretion-associated protein B (EspB) in vitro at residues Ala358 and Ala386. We also systematically characterize the specificity of MycP1 using peptide libraries, and show that it has evolved a narrow specificity relative to other subtilisins. Finally, comparison of the MycP1 and MycP3 structures suggest that both enzymes have stringent and different specificity profiles that result from the structurally distinct active site pockets, which could explain the system specific functioning of these proteases.

Indexed as

Amino Acid SequenceBacterial ProteinsBacterial Secretion SystemsCatalytic DomainConserved SequenceCrystallography, X-RayCystineModels, MolecularMolecular Sequence DataMycobacterium smegmatisMycobacterium tuberculosisPeptide FragmentsProtein BindingProtein Structure, SecondarySubstrate SpecificitySubtilisinsBacterial ProteinsBacterial Secretion SystemsCystinemycosin-1, Mycobacterium tuberculosisPeptide FragmentsSubtilisinsEspBESXM. tuberculosisMycPSubtilisinType VII secretion system

Identifiers

PMID24113528
PMCPMC3859186
OpenAlexW1981947451

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.