Evidence map›Paper›PMID 24112477›Full record

ArticleMolecular microbiology2013

Flow cytometry-based enrichment for cell shape mutants identifies multiple genes that influence Helicobacter pylori morphology.

Laura K Sycuro, Chelsea S Rule, Timothy W Petersen, Timna J Wyckoff, Tate Sessler, Dilip B Nagarkar, Fakhra Khalid, Zachary Pincus, Jacoby Biboy, Waldemar Vollmer and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Molecular microbiology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 84 citations in OpenAlex.

  1. Article
  2. CoccoidVirulence · 2025
    Review
  3. Article
  4. Molecules (Basel, Switzerland) · 2025
    Article
  5. Review
  6. Article
  7. Cells · 2024
    Article
  8. Article
  9. Article
  10. MultipleFrontiers in microbiology · 2023
    Article
  11. Distinct regions ofeLife · 2022
    Article
  12. Article
  13. Insights Into the Helical Shape Complex ofFrontiers in microbiology · 2022
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Laura K SycuroDivision of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA.
Chelsea S Rule
Timothy W Petersen
Timna J Wyckoff
Tate Sessler
Dilip B Nagarkar
Fakhra Khalid
Zachary Pincus
Jacoby Biboy
Waldemar Vollmer
Nina R Salama
Fred Hutch Cancer Center · USNewcastle University · GBBD Biosciences (United States) · USYale University · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Marian Esvelt · 1985 to 2026
$296.4M
GENETIC REQUIREMENTS OF HELICOBACTER PYLORI INFECTIONR01AI054423 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Nina Salama · 2004 to 2026
$9.5M
Elucidation of a bacterial cell shape generating program and pathogenic functionsR01AI094839 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SALAMA, NINA · 2012 to 2016
$2.1M
Discover determinants of individual longevity and health in C. elegansR00AG042487 · NIA · WASHINGTON UNIVERSITY · PI PINCUS, ZACHARY · 2014 to 2016
$740k
THE ROLE OF CELL SHAPE AND CELL WALL IN HELICOBACTER PYLORI PATHOGENESISR21AI082026 · NIAID · FRED HUTCHINSON CANCER RESEARCH CENTER · PI SALAMA, NINA · 2009 to 2010
$468k
Discover determinants of individual longevity and health in C. elegansK99AG042487 · NIA · YALE UNIVERSITY · PI PINCUS, ZACHARY · 2012 to 2013
$141k
Biotechnology and Biological Sciences Research Council BB/I020012/1NCI NIH HHS 30CA015704NCI NIH HHS P30 CA015704NIAID NIH HHS R01 AI054423NIAID NIH HHS R01AI054423NIAID NIH HHS R01AI082026NIAID NIH HHS R01 AI094839NIAID NIH HHS R21 AI082026NIA NIH HHS K99 AG042487NIA NIH HHS K99AG042487NIA NIH HHS R00 AG042487
6 · The paper itself

Abstract

The helical cell shape of Helicobacter pylori is highly conserved and contributes to its ability to swim through and colonize the viscous gastric mucus layer. A multi-faceted peptidoglycan (PG) modification programme involving four recently characterized peptidases and two accessory proteins is essential for maintaining H. pylori's helicity. To expedite identification of additional shape-determining genes, we employed flow cytometry with fluorescence-activated cell sorting (FACS) to enrich a transposon library for bacterial cells with altered light scattering profiles that correlate with perturbed cell morphology. After a single round of sorting, 15% of our clones exhibited a stable cell shape defect, reflecting 37-fold enrichment. Sorted clones with straight rod morphology contained insertions in known PG peptidases, as well as an insertion in csd6, which we demonstrated has ld-carboxypeptidase activity and cleaves monomeric tetrapeptides in the PG sacculus, yielding tripeptides. Other mutants had only slight changes in helicity due to insertions in genes encoding MviN/MurJ, a protein possibly involved in initiating PG synthesis, and the hypothetical protein HPG27_782. Our findings demonstrate FACS robustly detects perturbations of bacterial cell shape and identify additional PG peptide modifications associated with helical cell shape in H. pylori.

Indexed as

Genes, BacterialBacterial ProteinsBiological EvolutionCarboxypeptidasesCell MovementCell WallEndopeptidasesFlow CytometryHelicobacter pyloriMutationPeptidoglycanBacterial ProteinsCarboxypeptidasesEndopeptidasesPeptidoglycanpeptidoglycan endopeptidase

Identifiers

PMID24112477
PMCPMC3844677
OpenAlexW1481033789

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.