Evidence map›Paper›PMID 24112421›Full record

ArticleJournal of diabetes2014

CDKAL1 and HHEX are associated with type 2 diabetes-related traits among Yup'ik people.

Yann C Klimentidis, Dominick J Lemas, Howard H Wiener, Diane M O'Brien, Peter J Havel, Kimber L Stanhope, Scarlett E Hopkins, Hemant K Tiwari, Bert B Boyer

Abstract read
In one paragraph

Article in Journal of diabetes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 19 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Association Between Single Nucleotide Polymorphisms inDiabetes, metabolic syndrome and obesity : targets and therapy · 2020
    Article
  9. Type 2 Diabetes-Associated Genetic Polymorphisms as Potential Disease Predictors.Diabetes, metabolic syndrome and obesity : targets and therapy · 2019
    Review
  10. Article
  11. Article
  12. Article
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Yann C KlimentidisDivision of Epidemiology and Biostatistics, Mel and Enid Zuckerman College of Public Health, University of Arizona, Tucson, Arizona.
Dominick J Lemas
Howard H Wiener
Diane M O'Brien
Peter J Havel
Kimber L Stanhope
Scarlett E Hopkins
Hemant K Tiwari
Bert B Boyer
University of California, Davis · USUniversity of Alabama at Birmingham · USNative Health · USUniversity of Arizona · USUniversity of Colorado Denver · US

Funding

YUP'IK PERCEPTIONS OF BODY WEIGHT AND DIABETESP20RR016430 · NCRR · UNIVERSITY OF ALASKA FAIRBANKS · PI BOYER, BERT BRANDON · 2001 to 2011
$23.4M
Building Interdisciplinary Research Careers in Womens Health at UC Davis - Administrative SupplementK12HD051958 · NICHD · UNIVERSITY OF CALIFORNIA DAVIS · PI LANE, NANCY E · 2005 to 2023
$9.6M
Pilot Project ProgramP30GM103325 · NIGMS · UNIVERSITY OF ALASKA FAIRBANKS · PI O'BRIEN, DIANE MARIE · 2012 to 2016
$5.3M
Genetics of Obesity in Yup'ik EskimosR01DK074842 · NIDDK · UNIVERSITY OF ALASKA FAIRBANKS · PI BOYER, BERT BRANDON · 2007 to 2011
$2.8M
Whole-Genome Prediction of Type-2 Diabetes Susceptibility in Various PopulationsK01DK095032 · NIDDK · UNIVERSITY OF ARIZONA · PI KLIMENTIDIS, YANN CHARLES · 2012 to 2014
$440k
NCRR NIH HHS P20 RR016430NCRR NIH HHS P20RR016430NICHD NIH HHS K12 HD051958NIDDK NIH HHS K01 DK095032NIDDK NIH HHS R01 DK074842NIGMS NIH HHS P30 GM103325PHS HHS R01-DKO74842-02S1
6 · The paper itself

Abstract

backgroundGenome-wide association studies (GWAS) have identified single nucleotide polymorphisms (SNPs) associated with type 2 diabetes (T2D), mainly among individuals of European ancestry. In the present study, we examined the frequency of these SNPs and their association with T2D-related traits in an Alaska Native study population with a historically low prevalence of T2D. We also investigated whether dietary characteristics that may protect against T2D, such as n-3 polyunsaturated fatty acid (PUFA) intake, modify these associations.

methodsIn 1144 Yup'ik people, we examined 17 SNPs repeatedly identified in GWAS for individual and cumulative associations with T2D-related traits. Cumulative associations were evaluated using a genetic risk score (GRS) calculated by summing risk alleles. Associations were tested for interactions with sex, body mass index (BMI), and n-3 PUFA intake.

resultsThe rs7754840 SNP in CDKAL1 is significantly associated with HbA1c (P = 0.00091). The rs5015480 SNP near HHEX is significantly associated (in opposite direction to that in Europeans) with a combined fasting glucose (FG) and HbA1c measure (P = 0.00046) and with homeostatic model assessment of β-cell function (HOMA-B; P = 0.0014). The GRS is significantly associated with FG and combined FG and HbA1c only when the HHEX SNP is dropped from the GRS. Associations are not modified by BMI or n-3 PUFA intake.

conclusionOur results highlight the potential importance of CDKAL1 and HHEX in glucose homeostasis in this Alaska Native population with a low prevalence of T2D, and suggest that these loci should be examined in greater detail in this population.

Indexed as

AdultAlaskaBlood GlucoseBody Mass IndexCyclin-Dependent Kinase 5Diabetes Mellitus, Type 2DietFastingFatty Acids, Omega-3FemaleGene FrequencyGenetic Predisposition to DiseaseGenotypeGlycated HemoglobinHomeodomain ProteinsHumansBlood GlucoseCDKAL1 protein, humanCyclin-Dependent Kinase 5Fatty Acids, Omega-3Glycated HemoglobinHHEX protein, humanHomeodomain ProteinsInsulinTranscription FactorstRNA MethyltransferasesAlaska Nativeglycemic traitsn-3 polyunsaturated fatty acidstype 2 diabetes single nucleotide polymorphisms阿拉斯加原住民,血糖特征,n-3多不饱和脂肪酸,2型糖尿病单核苷酸多态性

Identifiers

PMID24112421
PMCPMC3964139
OpenAlexW281322245

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.