Evidence map›Paper›PMID 24109593›Full record

ArticleMolecular endocrinology (Baltimore, Md.)2013

Hepatic-specific accessibility of Igf1 gene enhancers is independent of growth hormone signaling.

Mahalakshmi Santhanam, Dennis J Chia

Open access · bronzeAbstract read
In one paragraph

Article in Molecular endocrinology (Baltimore, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Minireview: mechanisms of growth hormone-mediated gene regulation.Molecular endocrinology (Baltimore, Md.) · 2014
    Review
  5. Towards identification of molecular mechanisms of short stature.International journal of pediatric endocrinology · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Mahalakshmi SanthanamDivision of Pediatric Endocrinology & Diabetes, Icahn School of Medicine at Mount Sinai, One Gustave L. Levy Place, Box 1616, New York, NY 10029. dennis.chia@mountsinai.org.
Dennis J Chia
Icahn School of Medicine at Mount Sinai · US

Funding

Mechanisms of IGF-I gene transcriptional activation by growth hormone signalingK08DK077897 · NIDDK · OREGON HEALTH & SCIENCE UNIVERSITY · PI CHIA, DENNIS J · 2007 to 2011
$718k
Epigenetic Actions of Growth HormoneR03DK092307 · NIDDK · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHIA, DENNIS J · 2011 to 2012
$170k
NIDDK NIH HHS K08 DK077897NIDDK NIH HHS R03 DK092307
6 · The paper itself

Abstract

The diverse roles of IGF-1 in physiology include acting as the endocrine intermediate to elicit the anabolic actions of GH. The majority of serum IGF-1 is synthesized in liver, where GH stimulates Igf1 gene transcription via the transcription factor, signal transducer and activator of transcription (Stat)5b. We and others have identified multiple Stat5-binding domains at the Igf1 locus that function in gene regulation, but it remains unclear whether the roles of these domains are tissue specific. Survey of the chromatin landscape of regulatory domains can provide insight about mechanisms of gene regulation, with chromatin accessibility regarded as a hallmark feature of regulatory domains. We prepared chromatin from liver, kidney, and spleen of C57BL/6 mice, and used formaldehyde-associated isolation of regulatory elements to assess chromatin accessibility at the major Igf1 promoter and 7 -binding enhancers. Whereas the promoters of other prototypical tissue-specific genes are open in a tissue-specific way, the major Igf1 promoter is open in all 3 tissues, albeit moderately more so in liver. In contrast, chromatin accessibility at Igf1 Stat5-binding domains is essentially restricted to liver, indicating that the enhancers are driving extensive differences in tissue expression. Furthermore, studies with Ghrhr(lit/lit) mice reveal that prior GH exposure is not necessary to establish open chromatin at these domains. Lastly, formaldehyde-associated isolation of regulatory elements of human liver samples confirms open chromatin at IGF1 Promoter 1, but unexpectedly, homologous Stat5-binding motifs are not accessible. We conclude that robust GH-stimulated hepatic Igf1 gene transcription utilizes tissue-specific mechanisms of epigenetic regulation that are established independent of GH signaling.

Indexed as

AdolescentAnimalsChromatinEnhancer Elements, GeneticGene Expression RegulationGrowth HormoneHumansInsulin-Like Growth Factor ILiverMaleMiceMice, Inbred C57BLOrgan SpecificityProtein BindingProtein Structure, TertiarySignal TransductionChromatinGrowth HormoneInsulin-Like Growth Factor ISTAT5 Transcription Factor

Identifiers

PMID24109593
PMCPMC3857198
OpenAlexW2016096337

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.