Evidence map›Paper›PMID 24109214›Full record

ArticleJournal of virology2013

Simian foamy virus infection of rhesus macaques in Bangladesh: relationship of latent proviruses and transcriptionally active viruses.

Khanh Soliven, Xiaoxing Wang, Christopher T Small, Mostafa M Feeroz, Eun-Gyung Lee, Karen L Craig, Kamrul Hasan, Gregory A Engel, Lisa Jones-Engel, Frederick A Matsen and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Review
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  4. Article
  5. Evolutionary Medicine of Retroviruses in the Human Genome.The American journal of the medical sciences · 2019
    Review
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Structural basis for spumavirus GAG tethering to chromatin.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  14. Article
  15. Article
  16. Article
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  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Khanh SolivenBasic Sciences, Fred Hutchinson Cancer Research Center, Seattle, Washington, USA.
Xiaoxing Wang
Christopher T Small
Mostafa M Feeroz
Eun-Gyung Lee
Karen L Craig
Kamrul Hasan
Gregory A Engel
Lisa Jones-Engel
Frederick A Matsen
Maxine L Linial
Fred Hutch Cancer Center · USJahangirnagar University · BDSwedish Medical Center · USUniversity of Washington · US

Funding

YILMA SIV VACCINIA VACCINE TRIALP51RR000166 · NCRR · UNIVERSITY OF WASHINGTON · PI BAILLIE, THOMAS ALLAN · 1985 to 2011
$161.1M
VIRAL CODED FUNCTIONS IN ROUS SARCOMA VIRUSR01CA018282 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI LINIAL, MAXINE L · 1985 to 2011
$5.0M
Evolution and Emergence of Simian Retroviruses in South AsiaR01AI078229 · NIAID · UNIVERSITY OF WASHINGTON · PI BARRY, PETER A, ESCALANTE, ANANIAS ALBERTO · 2008 to 2012
$3.7M
Primate enteroviruses transmission in BangladeshR03AI064865 · NIAID · UNIVERSITY OF WASHINGTON · PI JONES-ENGEL, LISA E · 2006 to 2007
$172k
NCI NIH HHS CA18282NCI NIH HHS R01 CA018282NCRR NIH HHS P51 RR000166NIAID NIH HHS R01 AI078229NIAID NIH HHS R01AI078229-03S1NIAID NIH HHS R03 AI064865
6 · The paper itself

Abstract

Simian foamy viruses (SFV) are complex retroviruses that are ubiquitous in nonhuman primates (NHP) and are zoonotically transmitted to humans, presumably through NHP saliva, by licking, biting, and other behaviors. We have studied SFV in free-ranging rhesus macaques in Bangladesh. It has been previously shown that SFV in immunocompetent animals replicates to detectable levels only in superficial epithelial cells of the oral mucosa, although latent proviruses are found in most, if not all, tissues. In this study, we compare DNA sequences from latent SFV proviruses found in blood cells of 30 Bangladesh rhesus macaques to RNA sequences of transcriptionally active SFV from buccal swabs obtained from the same animals. Viral strains, defined by differences in SFV gag sequences, from buccal mucosal specimens overlapped with those from blood samples in 90% of animals. Thus, latent proviruses in peripheral blood mononuclear cells (PBMC) are, to a great extent, representative of viruses likely to be transmitted to other hosts. The level of SFV RNA in buccal swabs varied greatly between macaques, with increasing amounts of viral RNA in older animals. Evidence of APOBEC3-induced mutations was found in gag sequences derived from the blood and oral mucosa.

Indexed as

Transcription, GeneticVirus LatencyAnimalsBangladeshCheekFemaleGene Products, gagLeukocytes, MononuclearMacaca mulattaMalePrimate DiseasesProvirusesRetroviridae InfectionsRNA, ViralSimian foamy virusVirus ReplicationGene Products, gagRNA, Viral

Identifiers

PMID24109214
PMCPMC3838251
OpenAlexW2157226092

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.