Evidence map›Paper›PMID 24108619›Full record

ArticleHuman mutation2014

Exome sequencing as a diagnostic tool for pediatric-onset ataxia.

Sarah L Sawyer, Jeremy Schwartzentruber, Chandree L Beaulieu, David Dyment, Amanda Smith, Jodi Warman Chardon, Grace Yoon, Guy A Rouleau, Oksana Suchowersky, Victoria Siu and 8 more

Open access · hybridAbstract read
In one paragraph

Article in Human mutation, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 4 pooled it
7.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 4 syntheses or guidelines pooled it, 99 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Are whole-exome and whole-genome sequencing approaches cost-effective? A systematic review of the literature.Genetics in medicine : official journal of the American College of Medical Genetics · 2018
    Pooled it
  4. Guideline
  5. Review
  6. Article
  7. Genetic aspects of ataxias in a cohort of Turkish patients.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2024
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. NovelJournal of clinical neurology (Seoul, Korea) · 2022
    Article
  14. Article
  15. Review
  16. NGS in Hereditary Ataxia: When Rare Becomes Frequent.International journal of molecular sciences · 2021
    Article
  17. Review
  18. Article
  19. Paroxysmal Movement Disorders.Frontiers in neurology · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 1 country.

Sarah L Sawyer
Jeremy Schwartzentruber
Chandree L Beaulieu
David Dyment
Amanda Smith
Jodi Warman Chardon
Grace Yoon
Guy A Rouleau
Oksana Suchowersky
Victoria Siu
Lisa Murphy
Robert A Hegele
Christian R Marshall
FORGE Canada Consortium
Dennis E Bulman
Jacek Majewski
Mark Tarnopolsky
Kym M Boycott
Children's Hospital of Eastern Ontario · CAWestern University · CASickKids Foundation · CAUniversity of Ottawa · CAMcGill University · CAMcGill University and Génome Québec Innovation Centre · CAMcMaster Children's Hospital · CAMontreal Neurological Institute and Hospital · CAUniversity of Alberta · CA

Funding

Canadian Institutes of Health Research
6 · The paper itself

Abstract

Ataxia demonstrates substantial phenotypic and genetic heterogeneity. We set out to determine the diagnostic yield of exome sequencing in pediatric patients with ataxia without a molecular diagnosis after standard-of-care assessment in Canada. FORGE (Finding Of Rare disease GEnes) Canada is a nation-wide project focused on identifying novel disease genes for rare pediatric diseases using whole-exome sequencing. We retrospectively selected all FORGE Canada projects that included cerebellar ataxia as a feature. We identified 28 such families and a molecular diagnosis was made in 13; a success rate of 46%. In 11 families, we identified mutations in genes associated with known neurological syndromes and in two we identified novel disease genes. Exome analysis of sib pairs and/or patients born to consanguineous parents was more likely to be successful (9/13) than simplex cases (4/15). Our data suggest that exome sequencing is an effective first line test for pediatric patients with ataxia where a specific single gene is not immediately suspected to be causative.

Indexed as

ExomeSequence Analysis, DNACanadaCerebellar AtaxiaChildChild, PreschoolConsanguinityGenetic Predisposition to DiseaseGenetic VariationHumansMolecular Diagnostic TechniquesPedigreePolymorphism, Single NucleotideRetrospective Studies

Identifiers

PMID24108619
PMCPMC4255313
OpenAlexW2052453595

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.