Evidence map›Paper›PMID 24107993›Full record

ArticleNature2013

Visualizing virus assembly intermediates inside marine cyanobacteria.

Wei Dai, Caroline Fu, Desislava Raytcheva, John Flanagan, Htet A Khant, Xiangan Liu, Ryan H Rochat, Cameron Haase-Pettingell, Jacqueline Piret, Steve J Ludtke and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed, 140 citations in OpenAlex.

  1. Electron cryotomography reveals ultrastructure alterations in platelets from patients with ovarian cancer.Proceedings of the National Academy of Sciences of the United States of America · 2015
    Trial
  2. Article
  3. Review
  4. Review
  5. Viral Genome Delivery Across Bacterial Cell Surfaces.Annual review of microbiology · 2024
    Review
  6. Article
  7. Review
  8. Review
  9. Review
  10. Article
  11. Cryo-electron tomography to study viral infection.Biochemical Society transactions · 2023
    Review
  12. Article
  13. Article
  14. CryomicroscopyFaraday discussions · 2022
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 4 institutions in 2 countries.

Wei DaiNational Center for Macromolecular Imaging, Verna and Marrs Mclean Department of Biochemistry and Molecular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
Caroline Fu
Desislava Raytcheva
John Flanagan
Htet A Khant
Xiangan Liu
Ryan H Rochat
Cameron Haase-Pettingell
Jacqueline Piret
Steve J Ludtke
Kuniaki Nagayama
Michael F Schmid
Jonathan A King
Wah Chiu
Baylor College of Medicine · USMassachusetts Institute of Technology · USNational Institute for Physiological Sciences · JPNortheastern University · US

Funding

Center for Protein Folding Machinery (RMI)PN2EY016525 · NEI · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2005 to 2015
$33.6M
TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007330 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI PLON, SHARON E. · 1985 to 2019
$15.6M
3 D ELECTRON MICROSCOPY OF MACROMOLECULES (5P41RR002250-27)P41GM103832 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2012 to 2019
$15.1M
SUPPORT AND DEVELOPMENT OF EMAN FOR ELECTRON MICROSCOPY IMAGE PROCESSINGR01GM080139 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI LUDTKE, STEVEN J · 2006 to 2022
$5.4M
Structures of the portal vertex in dsDNA viruses and virus-infected cellsR56AI075208 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI CHIU, WAH · 2011 to 2011
$507k
NEI NIH HHS PN2 EY016525NEI NIH HHS PN2EY016525NIAID NIH HHS AI0175208NIAID NIH HHS R56 AI075208NIGMS NIH HHS GM080139NIGMS NIH HHS P41 GM103832NIGMS NIH HHS P41GM123832NIGMS NIH HHS R01 GM080139NIGMS NIH HHS T32 GM007330NIGMS NIH HHS T32GM007330NLM NIH HHS T15 LM007093NLM NIH HHS T15LM007093
6 · The paper itself

Abstract

Cyanobacteria are photosynthetic organisms responsible for ∼25% of organic carbon fixation on the Earth. These bacteria began to convert solar energy and carbon dioxide into bioenergy and oxygen more than two billion years ago. Cyanophages, which infect these bacteria, have an important role in regulating the marine ecosystem by controlling cyanobacteria community organization and mediating lateral gene transfer. Here we visualize the maturation process of cyanophage Syn5 inside its host cell, Synechococcus, using Zernike phase contrast electron cryo-tomography (cryoET). This imaging modality yields dramatic enhancement of image contrast over conventional cryoET and thus facilitates the direct identification of subcellular components, including thylakoid membranes, carboxysomes and polyribosomes, as well as phages, inside the congested cytosol of the infected cell. By correlating the structural features and relative abundance of viral progeny within cells at different stages of infection, we identify distinct Syn5 assembly intermediates. Our results indicate that the procapsid releases scaffolding proteins and expands its volume at an early stage of genome packaging. Later in the assembly process, we detected full particles with a tail either with or without an additional horn. The morphogenetic pathway we describe here is highly conserved and was probably established long before that of double-stranded DNA viruses infecting more complex organisms.

Indexed as

Virus AssemblyAquatic OrganismsBacteriophagesCryoelectron MicroscopyElectron Microscope TomographyModels, BiologicalSynechococcus

Identifiers

PMID24107993
PMCPMC3984937
OpenAlexW2009427913

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.