ArticlePlant methods2013
An online database for plant image analysis software tools.
Article in Plant methods, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
83 citing papers in PubMed.
- X-ray computed tomography images of wheat kernels and reconstructed three-dimensional shapes.Scientific data · 2026Article
- Estimating Radicle Length of Germinating Elm Seeds via Deep Learning.Sensors (Basel, Switzerland) · 2025Article
- Rootrainertrons: a novel root phenotyping method used to identify genotypic variation in lettuce rooting.Plant methods · 2025Article
- Multiscale Mathematical Modeling in Systems Biology: A Framework to Boost Plant Synthetic Biology.Plants (Basel, Switzerland) · 2025Review
- Spatial-Temporal Dynamics of Adventitious Roots ofLife (Basel, Switzerland) · 2025Article
- GRABSEEDS: extraction of plant organ traits through image analysis.Plant methods · 2024Article
- OPIA: an open archive of plant images and related phenotypic traits.Nucleic acids research · 2024Article
- In Situ Root Dataset Expansion Strategy Based on an Improved CycleGAN Generator.Plant phenomics (Washington, D.C.) · 2024Article
- Quantitative analysis of lateral root development with time-lapse imaging and deep neural network.Quantitative plant biology · 2024Article
- PREPs: An Open-Source Software for High-Throughput Field Plant Phenotyping.Plant phenomics (Washington, D.C.) · 2024Article
- Article
- Modeling the effects of strigolactone levels on maize root system architecture.Frontiers in plant science · 2023Article
- Non-destructive real-time analysis of plant metabolite accumulation in radish microgreens under different LED light recipes.Frontiers in plant science · 2023Article
- Towards grapevine root architectural models to adapt viticulture to drought.Frontiers in plant science · 2023Article
- RootPainter: deep learning segmentation of biological images with corrective annotation.The New phytologist · 2022Article
- LED color gradient as a new screening tool for rapid phenotyping of plant responses to light quality.GigaScience · 2022Article
- Article
- RhizoVision Explorer: open-source software for root image analysis and measurement standardization.AoB PLANTS · 2021Article
- Resources for image-based high-throughput phenotyping in crops and data sharing challenges.Plant physiology · 2021Article
- Open source 3D phenotyping of chickpea plant architecture across plant development.Plant methods · 2021Article
23 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundRecent years have seen an increase in methods for plant phenotyping using image analyses. These methods require new software solutions for data extraction and treatment. These solutions are instrumental in supporting various research pipelines, ranging from the localisation of cellular compounds to the quantification of tree canopies. However, due to the variety of existing tools and the lack of central repository, it is challenging for researchers to identify the software that is best suited for their research.
resultsWe present an online, manually curated, database referencing more than 90 plant image analysis software solutions. The website, plant-image-analysis.org, presents each software in a uniform and concise manner enabling users to identify the available solutions for their experimental needs. The website also enables user feedback, evaluations and new software submissions.
conclusionsThe plant-image-analysis.org database provides an overview of existing plant image analysis software. The aim of such a toolbox is to help users to find solutions, and to provide developers a way to exchange and communicate about their work.
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.