Evidence map›Paper›PMID 24105372›Full record

ArticleEuropean journal of human genetics : EJHG2014

A novel in-frame deletion affecting the BAR domain of OPHN1 in a family with intellectual disability and hippocampal alterations.

Cíntia Barros Santos-Rebouças, Stefanie Belet, Luciana Guedes de Almeida, Márcia Gonçalves Ribeiro, Enrique Medina-Acosta, Paulo Roberto Valle Bahia, Antônio Francisco Alves da Silva, Flávia Lima dos Santos, Glenda Corrêa Borges de Lacerda, Márcia Mattos Gonçalves Pimentel and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 38 citations in OpenAlex.

  1. OPHN1-related neurodevelopmental disorders: clinical and genetic findings with novel variants.Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2026
    Article
  2. Article
  3. Review
  4. Strabismus in Genetic Syndromes: A Review.Clinical & experimental ophthalmology · 2025
    Review
  5. Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Expanding the phenotypic spectrum associated with OPHN1 variants.European journal of medical genetics · 2019
    Article
  14. Oligophrenin-1 Connects Exocytotic Fusion to Compensatory Endocytosis in Neuroendocrine Cells.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2015
    Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 6 institutions in 2 countries.

Cíntia Barros Santos-RebouçasDepartment of Genetics, State University of Rio de Janeiro, Rio de Janeiro, Brazil.
Stefanie Belet1] Human Genome Laboratory, VIB Center for the Biology of Disease, KU Leuven, Leuven, Belgium [2] Human Genome Laboratory, Center for Human, Genetics, KU Leuven, Leuven, Belgium.
Luciana Guedes de AlmeidaDepartment of Genetics, State University of Rio de Janeiro, Rio de Janeiro, Brazil.
Márcia Gonçalves RibeiroClinical Genetics Service, IPPMG, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
Enrique Medina-AcostaLaboratory of Biotechnology, Center for Biosciences and Biotechnology, State University of North Fluminense Darcy Ribeiro, Rio de Janeiro, Brazil.
Paulo Roberto Valle BahiaDepartment of Neurology, Federal University of Rio de Janeiro, Rio de Janeiro, Brazil.
Antônio Francisco Alves da SilvaLaboratory of Biotechnology, Center for Biosciences and Biotechnology, State University of North Fluminense Darcy Ribeiro, Rio de Janeiro, Brazil.
Flávia Lima dos SantosDepartment of Genetics, State University of Rio de Janeiro, Rio de Janeiro, Brazil.
Glenda Corrêa Borges de Lacerda1] Epilepsy Outpatient Section, Fluminense Federal University, Rio de Janeiro, Brazil [2] Neurology and Neurophysiology Service, State University of Rio de Janeiro, Rio de Janeiro, Brazil.
Márcia Mattos Gonçalves PimentelDepartment of Genetics, State University of Rio de Janeiro, Rio de Janeiro, Brazil.
Guy Froyen1] Human Genome Laboratory, VIB Center for the Biology of Disease, KU Leuven, Leuven, Belgium [2] Human Genome Laboratory, Center for Human, Genetics, KU Leuven, Leuven, Belgium.
Universidade do Estado do Rio de Janeiro · BRState University of Norte Fluminense · BRUniversidade Federal do Rio de Janeiro · BRKU Leuven · BEUniversidade Federal Fluminense · BRVIB-KU Leuven Center for Cancer Biology · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Oligophrenin-1 (OPHN1) is one of at least seven genes located on chromosome X that take part in Rho GTPase-dependent signaling pathways involved in X-linked intellectual disability (XLID). Mutations in OPHN1 were primarily described as an exclusive cause of non-syndromic XLID, but the re-evaluation of the affected individuals using brain imaging displayed fronto-temporal atrophy and cerebellar hypoplasia as neuroanatomical marks. In this study, we describe clinical, genetic and neuroimaging data of a three generation Brazilian XLID family co-segregating a novel intragenic deletion in OPHN1. This deletion results in an in-frame loss of exon 7 at transcription level (c.781_891del; r.487_597del), which is predicted to abolish 37 amino acids from the highly conserved N-terminal BAR domain of OPHN1. cDNA expression analysis demonstrated that the mutant OPHN1 transcript is stable and no abnormal splicing was observed. Features shared by the affected males of this family include neonatal hypotonia, strabismus, prominent root of the nose, deep set eyes, hyperactivity and instability/intolerance to frustration. Cranial MRI scans showed large lateral ventricles, vermis hypoplasia and cystic dilatation of the cisterna magna in all affected males. Interestingly, hippocampal alterations that have not been reported in patients with loss-of-function OPHN1 mutations were found in three affected individuals, suggesting an important function for the BAR domain in the hippocampus. This is the first description of an in-frame deletion within the BAR domain of OPHN1 and could provide new insights into the role of this domain in relation to brain and cognitive development or function.

Indexed as

Reading FramesSequence DeletionAdolescentAdultBrainChildComparative Genomic HybridizationCytoskeletal ProteinsDNA Mutational AnalysisFaciesFemaleGTPase-Activating ProteinsHippocampusHumansIntellectual DisabilityMagnetic Resonance ImagingCytoskeletal ProteinsGTPase-Activating ProteinsNuclear ProteinsOPHN1 protein, human

Identifiers

PMID24105372
PMCPMC3992576
OpenAlexW1984304678

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.