Evidence map›Paper›PMID 24103914›Full record

ReviewJournal of molecular endocrinology2013

Understanding nuclear receptor form and function using structural biology.

Fraydoon Rastinejad, Pengxiang Huang, Vikas Chandra, Sepideh Khorasanizadeh

Abstract readReview
In one paragraph

Review in Journal of molecular endocrinology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 83 papers.

0numbers the graph read from it
0cells of the map it votes in
83citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

83 citing papers in PubMed.

  1. Article
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  11. Two ZnApplied and environmental microbiology · 2024
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  16. Review
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23 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Fraydoon RastinejadMetabolic Signaling and Disease Program, Sanford-Burnham Medical Research Institute, Orlando, Florida 32827, USA.
Pengxiang Huang
Vikas Chandra
Sepideh Khorasanizadeh

Funding

Identification of Allsoteric Ligands for Hepatic Nuclear Factor 4-alphaR01DK097475 · NIDDK · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI RASTINEJAD, FRAYDOON · 2013 to 2015
$1.8M
Structural Characterization of Metabolic Gene RegulatorsR01DK094147 · NIDDK · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI RASTINEJAD, FRAYDOON · 2011 to 2014
$1.7M
NIDDK NIH HHS R01 DK094147NIDDK NIH HHS R01 DK097475
6 · The paper itself

Abstract

Nuclear receptors (NRs) are a major transcription factor family whose members selectively bind small-molecule lipophilic ligands and transduce those signals into specific changes in gene programs. For over two decades, structural biology efforts were focused exclusively on the individual ligand-binding domains (LBDs) or DNA-binding domains of NRs. These analyses revealed the basis for both ligand and DNA binding and also revealed receptor conformations representing both the activated and repressed states. Additionally, crystallographic studies explained how NR LBD surfaces recognize discrete portions of transcriptional coregulators. The many structural snapshots of LBDs have also guided the development of synthetic ligands with therapeutic potential. Yet, the exclusive structural focus on isolated NR domains has made it difficult to conceptualize how all the NR polypeptide segments are coordinated physically and functionally in the context of receptor quaternary architectures. Newly emerged crystal structures of the peroxisome proliferator-activated receptor-γ-retinoid X receptor α (PPARγ-RXRα) heterodimer and hepatocyte nuclear factor (HNF)-4α homodimer have recently revealed the higher order organizations of these receptor complexes on DNA, as well as the complexity and uniqueness of their domain-domain interfaces. These emerging structural advances promise to better explain how signals in one domain can be allosterically transmitted to distal receptor domains, also providing much better frameworks for guiding future drug discovery efforts.

Indexed as

AnimalsHepatocyte Nuclear FactorsHumansPPAR gammaReceptors, Cytoplasmic and NuclearRetinoid X Receptor alphaTranscription FactorsHepatocyte Nuclear FactorsPPAR gammaReceptors, Cytoplasmic and NuclearRetinoid X Receptor alphaTranscription Factorsgene regulationmetabolismnuclear receptorssteroid hormonestranscription factors

Identifiers

PMID24103914
PMCPMC3871882

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.