Evidence map›Paper›PMID 24102660›Full record

ArticleFEMS microbiology letters2014

luxS in bacteria isolated from 25- to 40-million-year-old amber.

Tasha M Santiago-Rodriguez, Ana R Patrício, Jessica I Rivera, Mariel Coradin, Alfredo Gonzalez, Gabriela Tirado, Raúl J Cano, Gary A Toranzos

Open access · greenAbstract read
In one paragraph

Article in FEMS microbiology letters, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 3 countries.

Tasha M Santiago-RodriguezEnvironmental Microbiology Laboratory, Department of Biology, University of Puerto Rico, Rico, San Juan, Puerto Rico; Department of Pathology, University of California, San Diego, CA, USA.
Ana R Patrício
Jessica I Rivera
Mariel Coradin
Alfredo Gonzalez
Gabriela Tirado
Raúl J Cano
Gary A Toranzos
University of Puerto Rico System · PRCalifornia Polytechnic State University · US

Funding

Upgrade Laboratories Facilities at UPR-Rio PiedrasR25GM061151 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 2001 to 2023
$32.5M
RIO PIEDRAS MARC U*STAR DEVELOPMENT PROGRAMT34GM007821 · NIGMS · UNIVERSITY OF PUERTO RICO RIO PIEDRAS · PI CARBALLEIRA, NESTOR MANUEL · 1985 to 2020
$20.3M
NIGMS NIH HHS 2R25GM061151-09NIGMS NIH HHS R25 GM061151NIGMS NIH HHS T34 GM007821
6 · The paper itself

Abstract

Interspecies bacterial communication is mediated by autoinducer-2, whose synthesis depends on luxS. Due to the apparent universality of luxS (present in more than 40 bacterial species), it may have an ancient origin; however, no direct evidence is currently available. We amplified luxS in bacteria isolated from 25- to 40-million-year-old amber. The phylogenies and molecular clocks of luxS and the 16S rRNA gene from ancient and extant bacteria were determined as well. Luminescence assays using Vibrio harveyi BB170 aimed to determine the activity of luxS. While the phylogeny of luxS was very similar to that of extant Bacillus spp., amber isolates exhibited unique 16S rRNA gene phylogenies. This suggests that luxS may have been acquired by horizontal transfer millions of years ago. Molecular clocks of luxS suggest slow evolutionary rates, similar to those of the 16S rRNA gene and consistent with a conserved gene. Dendograms of the 16S rRNA gene and luxS show two separate clusters for the extant and ancient bacteria, confirming the uniqueness of the latter group.

Indexed as

AmberBacteriaBacterial ProteinsCarbon-Sulfur LyasesCluster AnalysisDNA, BacterialDNA, RibosomalEvolution, MolecularLuminescent MeasurementsPhylogenyQuorum SensingRNA, Ribosomal, 16SSequence AlignmentSequence Analysis, DNAVibrioAmberBacterial ProteinsCarbon-Sulfur LyasesDNA, BacterialDNA, RibosomalLuxS protein, BacteriaRNA, Ribosomal, 16Sancient bacteriaautoinducer-2bacterial communicationluxSquorum sensing

Identifiers

PMID24102660
PMCPMC4096244
OpenAlexW2004407733

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.