Evidence map›Paper›PMID 24101498›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Direct observation of structurally encoded metal discrimination and ether bond formation in a heterodinuclear metalloprotein.

Julia J Griese, Katarina Roos, Nicholas Cox, Hannah S Shafaat, Rui M M Branca, Janne Lehtiö, Astrid Gräslund, Wolfgang Lubitz, Per E M Siegbahn, Martin Högbom

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 55 citations in OpenAlex.

  1. Article
  2. Review
  3. Electronic and Structural Heterogeneity in the Diiron Center of Sulerythrin: Insights From Hybrid QM/MM Calculations.Chemphyschem : a European journal of chemical physics and physical chemistry · 2026
    Article
  4. Article
  5. Article
  6. OJournal of the American Chemical Society · 2025
    Article
  7. Article
  8. Accessing a synthetic FeChemical science · 2024
    Article
  9. Article
  10. Bioinformatic Discovery of a Cambialistic Monooxygenase.Journal of the American Chemical Society · 2024
    Article
  11. Enzymatic Hydroxylation of Aliphatic C-H Bonds by a Mn/Fe Cofactor.Journal of the American Chemical Society · 2023
    Article
  12. Steric Effects on the Chelation of MnChemistry (Weinheim an der Bergstrasse, Germany) · 2023
    Article
  13. Enzymatic Hydroxylation of Aliphatic C-H Bonds by a Mn/Fe Cofactor.bioRxiv : the preprint server for biology · 2023
    Article
  14. Why is manganese so valuable to bacterial pathogens?Frontiers in cellular and infection microbiology · 2023
    Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Julia J GrieseStockholm Center for Biomembrane Research, Department of Biochemistry and Biophysics and Department of Physics, Stockholm University, SE-106 91 Stockholm, Sweden.
Katarina Roos
Nicholas Cox
Hannah S Shafaat
Rui M M Branca
Janne Lehtiö
Astrid Gräslund
Wolfgang Lubitz
Per E M Siegbahn
Martin Högbom
Max Planck Institute for Chemical Energy Conversion · DEStockholm University · SEKarolinska Institutet · SEScience for Life Laboratory · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Although metallocofactors are ubiquitous in enzyme catalysis, how metal binding specificity arises remains poorly understood, especially in the case of metals with similar primary ligand preferences such as manganese and iron. The biochemical selection of manganese over iron presents a particularly intricate problem because manganese is generally present in cells at a lower concentration than iron, while also having a lower predicted complex stability according to the Irving-Williams series (Mn(II) < Fe(II) < Ni(II) < Co(II) < Cu(II) > Zn(II)). Here we show that a heterodinuclear Mn/Fe cofactor with the same primary protein ligands in both metal sites self-assembles from Mn(II) and Fe(II) in vitro, thus diverging from the Irving-Williams series without requiring auxiliary factors such as metallochaperones. Crystallographic, spectroscopic, and computational data demonstrate that one of the two metal sites preferentially binds Fe(II) over Mn(II) as expected, whereas the other site is nonspecific, binding equal amounts of both metals in the absence of oxygen. Oxygen exposure results in further accumulation of the Mn/Fe cofactor, indicating that cofactor assembly is at least a two-step process governed by both the intrinsic metal specificity of the protein scaffold and additional effects exerted during oxygen binding or activation. We further show that the mixed-metal cofactor catalyzes a two-electron oxidation of the protein scaffold, yielding a tyrosine-valine ether cross-link. Theoretical modeling of the reaction by density functional theory suggests a multistep mechanism including a valyl radical intermediate.

Indexed as

Protein MultimerizationAlgorithmsBacterial ProteinsBinding, CompetitiveBinding SitesCatalysisCatalytic DomainCrystallography, X-RayElectron Spin Resonance SpectroscopyEtherGeobacillusIronManganeseMetalloproteinsMetalsModels, ChemicalBacterial ProteinsEtherIronManganeseMetalloproteinsMetalsOxygenribonucleotide reductase R2 subunitRibonucleotide Reductasesdi-metal carboxylate proteinEPR spectroscopyferritin superfamilyprotein metallationX-ray crystallography

Identifiers

PMID24101498
PMCPMC3808653
OpenAlexW2134352877

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.