Evidence map›Paper›PMID 24101494›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Mining the O-mannose glycoproteome reveals cadherins as major O-mannosylated glycoproteins.

Malene B Vester-Christensen, Adnan Halim, Hiren Jitendra Joshi, Catharina Steentoft, Eric P Bennett, Steven B Levery, Sergey Y Vakhrushev, Henrik Clausen

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
9.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 158 citations in OpenAlex.

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  11. The SHDRA syndrome-associated geneProceedings of the National Academy of Sciences of the United States of America · 2023
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  18. Site-specificiScience · 2021
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Malene B Vester-ChristensenCopenhagen Center for Glycomics and Department of Cellular and Molecular Medicine and School of Dentistry, Faculty of Health Sciences, University of Copenhagen, DK-2200 Copenhagen N, Denmark.
Adnan Halim
Hiren Jitendra Joshi
Catharina Steentoft
Eric P Bennett
Steven B Levery
Sergey Y Vakhrushev
Henrik Clausen
University of Copenhagen · DK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The metazoan O-mannose (O-Man) glycoproteome is largely unknown. It has been shown that up to 30% of brain O-glycans are of the O-Man type, but essentially only alpha-dystroglycan (α-DG) of the dystrophin-glycoprotein complex is well characterized as an O-Man glycoprotein. Defects in O-Man glycosylation underlie congenital muscular dystrophies and considerable efforts have been devoted to explore this O-glycoproteome without much success. Here, we used our SimpleCell strategy using nuclease-mediated gene editing of a human cell line (MDA-MB-231) to reduce the structural heterogeneity of O-Man glycans and to probe the O-Man glycoproteome. In this breast cancer cell line we found that O-Man glycosylation is primarily found on cadherins and plexins on β-strands in extracellular cadherin and Ig-like, plexin and transcription factor domains. The positions and evolutionary conservation of O-Man glycans in cadherins suggest that they play important functional roles for this large group of cell adhesion glycoproteins, which can now be addressed. The developed O-Man SimpleCell strategy is applicable to most types of cell lines and enables proteome-wide discovery of O-Man protein glycosylation.

Indexed as

CadherinsCell Adhesion MoleculesCell Line, TumorGlycoproteinsGlycosylationHumansMannoseMass SpectrometryNerve Tissue ProteinsProteomeProteomicsCadherinsCell Adhesion MoleculesGlycoproteinsMannoseNerve Tissue ProteinsplexinProteomeglycoproteomicsmass spectrometryO-glycosylationOrbitrapPOMGnT1

Identifiers

PMID24101494
PMCPMC3876253
OpenAlexW2025249339

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.