Evidence map›Paper›PMID 24100324›Full record

ArticleActa crystallographica. Section D, Biological crystallography2013

Structure of fully liganded Hb ζ2β2s trapped in a tense conformation.

Martin K Safo, Tzu-Ping Ko, Osheiza Abdulmalik, Zhenning He, Andrew H-J Wang, Eric R Schreiter, J Eric Russell

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

  1. Hemoglobin: Structure, Function and Allostery.Sub-cellular biochemistry · 2020
    Review
  2. Article
  3. Structural basis for the antipolymer activity of Hb ζJournal of molecular structure · 2015
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 2 countries.

Martin K SafoInstitute for Structural Biology and Drug Discovery, and the Department of Medicinal Chemistry, School of Pharmacy, Virginia Commonwealth University, Richmond, VA 23298, USA.
Tzu-Ping Ko
Osheiza Abdulmalik
Zhenning He
Andrew H-J Wang
Eric R Schreiter
J Eric Russell
Children's Hospital of Philadelphia · USInstitute of Biological Chemistry, Academia Sinica · TWHoward Hughes Medical Institute · USUniversity of Pennsylvania · USVirginia Commonwealth University · US

Funding

Virus Vector Shared ResourceP30CA016059 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI Keri R Maher · 1985 to 2026
$51.0M
UPR COBRE: PROTEIN STRUCTURE FUNCTION &DYNAMICS: ADMINISTRATIVE COREP20RR016439 · NCRR · UNIVERSITY OF PUERTO RICO MAYAGUEZ · PI LOPEZ-QUINONES, GUSTAVO E · 2001 to 2005
$7.3M
REGULATION AND FUNCTION OF A HUMAN EMBRYONIC GLOBINR01HL061399 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI RUSSELL, J ERIC · 1999 to 2012
$3.9M
Nucleolin-mediated stabilization of human B-globin mRNAR01HL082754 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI RUSSELL, J ERIC · 2007 to 2011
$2.0M
Structure and Function of Stability-Enhanced Beta-Globin mRNAsK01HL103186 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI ABDULMALIK, OSHEIZA Y · 2010 to 2014
$697k
NCI NIH HHS CA16059NCI NIH HHS P30 CA016059NCRR NIH HHS 5P20RR016439-05NCRR NIH HHS P20 RR016439NHLBI NIH HHS HL061399NHLBI NIH HHS HL082754NHLBI NIH HHS HL103186NHLBI NIH HHS K01 HL103186NHLBI NIH HHS R01 HL061399NHLBI NIH HHS R01 HL082754
6 · The paper itself

Abstract

A variant Hb ζ2β2(s) that is formed from sickle hemoglobin (Hb S; α2β2(s)) by exchanging adult α-globin with embryonic ζ-globin subunits shows promise as a therapeutic agent for sickle-cell disease (SCD). Hb ζ2β2(s) inhibits the polymerization of deoxygenated Hb S in vitro and reverses characteristic features of SCD in vivo in mouse models of the disorder. When compared with either Hb S or with normal human adult Hb A (α2β2), Hb ζ2β2(s) exhibits atypical properties that include a high oxygen affinity, reduced cooperativity, a weak Bohr effect and blunted 2,3-diphosphoglycerate allostery. Here, the 1.95 Å resolution crystal structure of human Hb ζ2β2(s) that was expressed in complex transgenic knockout mice and purified from their erythrocytes is presented. When fully liganded with carbon monoxide, Hb ζ2β2(s) displays a central water cavity, a ζ1-β(s)2 (or ζ2-β(s)1) interface, intersubunit salt-bridge/hydrogen-bond interactions, C-terminal βHis146 salt-bridge interactions, and a β-cleft, that are highly unusual for a relaxed hemoglobin structure and are more typical of a tense conformation. These quaternary tense-like features contrast with the tertiary relaxed-like conformations of the ζ1β(s)1 dimer and the CD and FG corners, as well as the overall structures of the heme cavities. This crystallographic study provides insights into the altered oxygen-transport properties of Hb ζ2β2(s) and, moreover, decouples tertiary- and quaternary-structural events that are critical to Hb ligand binding and allosteric function.

Indexed as

AdultAllosteric Regulationalpha-GlobinsAnemia, Sickle CellAnimalsCrystallography, X-RayGenetic VariationHemoglobin, SickleHumansLigandsMiceMice, KnockoutMice, TransgenicOxygenProtein BindingProtein Conformationalpha-GlobinsHemoglobin, SickleLigandsOxygenzeta-Globins2,3-disphosphoglycerateallosteryBohr effectcooperativityhemoglobinrelaxed statetense state

Identifiers

PMID24100324
PMCPMC3792644
OpenAlexW2027033920

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.