Evidence map›Paper›PMID 24100122›Full record

ReviewThe Journal of allergy and clinical immunology2014

Gene hunting in the genomic era: approaches to diagnostic dilemmas in patients with primary immunodeficiencies.

Craig Platt, Raif S Geha, Janet Chou

Open access · bronzeAbstract readReview
In one paragraph

Review in The Journal of allergy and clinical immunology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 35 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Systems biology of asthma and allergic diseases: a multiscale approach.The Journal of allergy and clinical immunology · 2015
    Review
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Craig PlattDivision of Immunology and the Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Raif S GehaDivision of Immunology and the Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Mass.
Janet ChouDivision of Immunology and the Department of Pediatrics, Boston Children's Hospital, Harvard Medical School, Boston, Mass. Electronic address: janet.chou@childrens.harvard.edu.
Harvard University · USBoston Children's Hospital · US

Funding

Role of TACI mutations in CVIDP01AI076210 · NIAID · BETH ISRAEL DEACONESS MEDICAL CENTER · PI TERHORST, CORNELIS P · 2009 to 2013
$9.0M
The Child Heath Research CenterK12HD052896 · NICHD · BOSTON CHILDREN'S HOSPITAL · PI Wendy K Chung · 2007 to 2026
$7.9M
Combined SNP analysis and whole genome sequencing to discover immunodeficiency geR03AI094017 · NIAID · BOSTON CHILDREN'S HOSPITAL · PI GEHA, RAIF SALIM · 2011 to 2012
$174k
NIAID NIH HHS AI-076210NIAID NIH HHS AI094017NIAID NIH HHS P01 AI076210NIAID NIH HHS R03 AI094017NICHD NIH HHS 1 K12 HD052896-01A1NICHD NIH HHS K12 HD052896
6 · The paper itself

Abstract

There are more than 180 different genetic causes of primary immunodeficiencies identified to date. Approaches for identifying causative mutations can be broadly classified into 3 strategies: (1) educated guesses based on known signaling pathways essential for immune cell development and function, (2) similarity of clinical phenotypes to mouse models, and (3) unbiased genetic approaches. Next-generation DNA sequencing permits efficient sequencing of whole genomes or exomes but also requires strategies for filtering vast amounts of data. Recent studies have identified ways to solve difficult cases, such as diseases with autosomal dominant inheritance, incomplete penetrance, or mutations in noncoding regions. This review focuses on recently identified primary immunodeficiencies to illustrate the strategies, technologies, and potential pitfalls in finding novel causes of these diseases.

Indexed as

AnimalsExomeGene Expression RegulationGenetic CounselingGenetic LinkageGenomicsGenotypeHigh-Throughput Nucleotide SequencingHumansImmunologic Deficiency SyndromesMicePedigreePhenotypeSignal Transductionhomozygosity mappinglinkage analysisPrimary immunodeficiencieswhole-exome sequencingwhole-genome sequencing

Identifiers

PMID24100122
PMCPMC3976463
OpenAlexW2013326607

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.