Evidence map›Paper›PMID 24098822›Full record

ArticlePLoS neglected tropical diseases2013

Pathogenomic inference of virulence-associated genes in Leptospira interrogans.

Jason S Lehmann, Derrick E Fouts, Daniel H Haft, Anthony P Cannella, Jessica N Ricaldi, Lauren Brinkac, Derek Harkins, Scott Durkin, Ravi Sanka, Granger Sutton and 3 more

Open access · goldAbstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.9field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 62 citations in OpenAlex.

  1. Article
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  8. Application of Genomic Selection in Beef Cattle Disease Prevention.Animals : an open access journal from MDPI · 2025
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  12. Comparison of the PF07598-Encoded Virulence-Modifying Proteins ofTropical medicine and infectious disease · 2022
    Review
  13. Tropical medicine and infectious disease · 2022
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  14. PathogenicFrontiers in microbiology · 2022
    Article
  15. Frontiers in molecular biosciences · 2022
    Article
  16. Article
  17. Vaccination WithFrontiers in cellular and infection microbiology · 2022
    Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Jason S LehmannDivision of Infectious Diseases, Department of Medicine, University of California San Diego School of Medicine, La Jolla, California, United States of America.
Derrick E Fouts
Daniel H Haft
Anthony P Cannella
Jessica N Ricaldi
Lauren Brinkac
Derek Harkins
Scott Durkin
Ravi Sanka
Granger Sutton
Angelo Moreno
Joseph M Vinetz
Michael A Matthias
J. Craig Venter Institute · USUniversity of California, San Diego · US

Funding

Mentoring Young Minds to Increase Diversity in the Biomedical ResearchR25GM083275 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI DE MAIO, ANTONIO, LAWSON, MARK ANDREW · 2008 to 2022
$9.9M
Training Program in Basic Clinical GeneticsT32GM008666 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI HAMILTON, BRUCE A · 1998 to 2021
$8.6M
Translational Research Development for Endemic Infectious Diseases of AmazoniaD43TW007120 · FIC · YALE UNIVERSITY · PI VINETZ, JOSEPH M. · 2004 to 2020
$3.0M
Leptospirosis Transmission in the Peruvian AmazonR01TW005860 · FIC · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI VINETZ, JOSEPH M. · 2002 to 2006
$2.4M
Patient-Oriented Research in Tropical Infectious DiseasesK24AI068903 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VINETZ, JOSEPH M. · 2006 to 2015
$1.5M
Microarray Analysis of Leptospiral GenomesR21AI064466 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI VINETZ, JOSEPH M. · 2006 to 2007
$491k
FIC NIH HHS 1D43TW007120FIC NIH HHS D43 TW007120FIC NIH HHS R01 TW005860FIC NIH HHS R01TW05860NIAID NIH HHS HHSN272200900007CNIAID NIH HHS K24 AI068903NIAID NIH HHS R21 AI064466NIAID NIH HHS R21AI064466NIGMS NIH HHS R25 GM083275NIGMS NIH HHS R25GM083275NIGMS NIH HHS T32 GM008666
6 · The paper itself

Abstract

Leptospirosis is a globally important, neglected zoonotic infection caused by spirochetes of the genus Leptospira. Since genetic transformation remains technically limited for pathogenic Leptospira, a systems biology pathogenomic approach was used to infer leptospiral virulence genes by whole genome comparison of culture-attenuated Leptospira interrogans serovar Lai with its virulent, isogenic parent. Among the 11 pathogen-specific protein-coding genes in which non-synonymous mutations were found, a putative soluble adenylate cyclase with host cell cAMP-elevating activity, and two members of a previously unstudied ∼15 member paralogous gene family of unknown function were identified. This gene family was also uniquely found in the alpha-proteobacteria Bartonella bacilliformis and Bartonella australis that are geographically restricted to the Andes and Australia, respectively. How the pathogenic Leptospira and these two Bartonella species came to share this expanded gene family remains an evolutionary mystery. In vivo expression analyses demonstrated up-regulation of 10/11 Leptospira genes identified in the attenuation screen, and profound in vivo, tissue-specific up-regulation by members of the paralogous gene family, suggesting a direct role in virulence and host-pathogen interactions. The pathogenomic experimental design here is generalizable as a functional systems biology approach to studying bacterial pathogenesis and virulence and should encourage similar experimental studies of other pathogens.

Indexed as

Genome, BacterialAnimalsBacterial ProteinsBartonellaCricetinaeDNA Mutational AnalysisGene Expression Regulation, BacterialLeptospira interrogansLeptospirosisMesocricetusSequence Analysis, DNAVirulence FactorsBacterial ProteinsVirulence Factors

Identifiers

PMID24098822
PMCPMC3789758
OpenAlexW2037654995

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.