Evidence map›Paper›PMID 24098150›Full record

ArticlePLoS genetics2013

A mutation in the SUV39H2 gene in Labrador Retrievers with hereditary nasal parakeratosis (HNPK) provides insights into the epigenetics of keratinocyte differentiation.

Vidhya Jagannathan, Jeanette Bannoehr, Philippe Plattet, Regula Hauswirth, Cord Drögemüller, Michaela Drögemüller, Dominique J Wiener, Marcus Doherr, Marta Owczarek-Lipska, Arnaud Galichet and 10 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 4 countries.

Vidhya JagannathanInstitute of Genetics, Vetsuisse Faculty, University of Bern, Bern, Switzerland ; DermFocus, University of Bern, Bern, Switzerland.
Jeanette Bannoehr
Philippe Plattet
Regula Hauswirth
Cord Drögemüller
Michaela Drögemüller
Dominique J Wiener
Marcus Doherr
Marta Owczarek-Lipska
Arnaud Galichet
Monika M Welle
Katarina Tengvall
Kerstin Bergvall
Hannes Lohi
Silvia Rüfenacht
Monika Linek
Manon Paradis
Eliane J Müller
Petra Roosje
Tosso Leeb
University of Bern · CHFolkhälsans Forskningscentrum · FIHirslanden Klinik Aarau · CHScience for Life Laboratory · SESwedish University of Agricultural Sciences · SEUniversité de Montréal · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hereditary nasal parakeratosis (HNPK), an inherited monogenic autosomal recessive skin disorder, leads to crusts and fissures on the nasal planum of Labrador Retrievers. We performed a genome-wide association study (GWAS) using 13 HNPK cases and 23 controls. We obtained a single strong association signal on chromosome 2 (p(raw) = 4.4×10⁻¹⁴). The analysis of shared haplotypes among the 13 cases defined a critical interval of 1.6 Mb with 25 predicted genes. We re-sequenced the genome of one case at 38× coverage and detected 3 non-synonymous variants in the critical interval with respect to the reference genome assembly. We genotyped these variants in larger cohorts of dogs and only one was perfectly associated with the HNPK phenotype in a cohort of more than 500 dogs. This candidate causative variant is a missense variant in the SUV39H2 gene encoding a histone 3 lysine 9 (H3K9) methyltransferase, which mediates chromatin silencing. The variant c.972T>G is predicted to change an evolutionary conserved asparagine into a lysine in the catalytically active domain of the enzyme (p.N324K). We further studied the histopathological alterations in the epidermis in vivo. Our data suggest that the HNPK phenotype is not caused by hyperproliferation, but rather delayed terminal differentiation of keratinocytes. Thus, our data provide evidence that SUV39H2 is involved in the epigenetic regulation of keratinocyte differentiation ensuring proper stratification and tight sealing of the mammalian epidermis.

Indexed as

Epigenesis, GeneticGenome-Wide Association StudyAnimalsBase SequenceCell DifferentiationDog DiseasesDogsGenetic Predisposition to DiseaseHaplotypesHistone-Lysine N-MethyltransferaseHumansKeratinocytesMethyltransferasesMutationNoseParakeratosisHistone-Lysine N-MethyltransferaseMethyltransferasesSUV39H2 protein, human

Identifiers

PMID24098150
PMCPMC3789836
OpenAlexW2166069190

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.