Evidence map›Paper›PMID 24097985›Full record

ArticleThe Journal of biological chemistry2013

Polyamines are critical for the induction of the glutamate decarboxylase-dependent acid resistance system in Escherichia coli.

Manas K Chattopadhyay, Herbert Tabor

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 42 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Manas K ChattopadhyayLaboratory of Biochemistry and Genetics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892. Electronic address: manasc@intra.niddk.nih.gov.
Herbert TaborLaboratory of Biochemistry and Genetics, NIDDK, National Institutes of Health, Bethesda, Maryland 20892.
National Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

Polyamine Biosynthesis And Physiological FunctionsZIADK024709 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI TABOR, HERBERT · 2009 to 2020
$4.9M
Intramural NIH HHS
6 · The paper itself

Abstract

As part of our studies on the biological functions of polyamines, we have used a mutant of Escherichia coli that lacks all the genes for polyamine biosynthesis for a global transcriptional analysis on the effect of added polyamines. The most striking early response to the polyamine addition is the increased expression of the genes for the glutamate-dependent acid resistance system (GDAR) that is important for the survival of the bacteria when passing through the acid environment of the stomach. Not only were the two genes for glutamate decarboxylases (gadA and gadB) and the gene for glutamate-γ-aminobutyrate antiporter (gadC) induced by the polyamine addition, but the various genes involved in the regulation of this system were also induced. We confirmed the importance of polyamines for the induction of the GDAR system by direct measurement of glutamate decarboxylase activity and acid survival. The effect of deletions of the regulatory genes on the GDAR system and the effects of overproduction of two of these genes were also studied. Strikingly, overproduction of the alternative σ factor rpoS and of the regulatory gene gadE resulted in very high levels of glutamate decarboxylase and almost complete protection against acid stress even in the absence of any polyamines. Thus, these data show that a major function of polyamines in E. coli is protection against acid stress by increasing the synthesis of glutamate decarboxylase, presumably by increasing the levels of the rpoS and gadE regulators.

Indexed as

Bacterial ProteinsBiogenic PolyaminesDrug Resistance, BacterialEscherichia coliEscherichia coli ProteinsGlutamate DecarboxylaseGlutamic AcidMembrane ProteinsSigma FactorTranscription FactorsBacterial ProteinsBiogenic PolyaminesEscherichia coli ProteinsgadA protein, E coligadB protein, E coliGadC protein, E coliGadE protein, E coliGlutamate DecarboxylaseGlutamic AcidMembrane ProteinsSigma Factorsigma factor KatF protein, BacteriaTranscription FactorsBacteriaCyclic AMP (cAMP)DecarboxylaseGene ExpressionGlutamateMicroarrayPolyaminesPutrescineSpermidine

Identifiers

PMID24097985
PMCPMC3837104
OpenAlexW2046943467

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.