Evidence map›Paper›PMID 24097111›Full record

ArticleNature immunology2013

A DNA break- and phosphorylation-dependent positive feedback loop promotes immunoglobulin class-switch recombination.

Bao Q Vuong, Kayleigh Herrick-Reynolds, Bharat Vaidyanathan, Joseph N Pucella, Anna J Ucher, Nina M Donghia, Xiwen Gu, Laura Nicolas, Urszula Nowak, Numa Rahman and 4 more

Open access · greenAbstract read
In one paragraph

Article in Nature immunology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 64 citations in OpenAlex.

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  11. Cutting Edge: ATM Influences Germinal Center Integrity.Journal of immunology (Baltimore, Md. : 1950) · 2019
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 1 country.

Bao Q VuongImmunology Program, Memorial Sloan-Kettering Cancer Center, Gerstner Sloan-Kettering Graduate School, New York, New York, USA.
Kayleigh Herrick-Reynolds *Immunology Program, Memorial Sloan-Kettering Cancer Center, Gerstner Sloan-Kettering Graduate School, New York, New York, USA.
Bharat Vaidyanathan *Immunology Program, Memorial Sloan-Kettering Cancer Center, Gerstner Sloan-Kettering Graduate School, New York, New York, USA.
Joseph N Pucella *Immunology Program, Memorial Sloan-Kettering Cancer Center, Gerstner Sloan-Kettering Graduate School, New York, New York, USA.
Anna J UcherDepartment of Microbiology & Physiological Systems, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Nina M DonghiaThe Jackson Laboratory, Bar Harbor, Maine, USA.
Xiwen GuYale Cancer Center, Yale University School of Medicine, New Haven, Connecticut, USA.
Laura NicolasImmunology Program, Memorial Sloan-Kettering Cancer Center, Gerstner Sloan-Kettering Graduate School, New York, New York, USA.
Urszula NowakImmunology Program, Memorial Sloan-Kettering Cancer Center, Gerstner Sloan-Kettering Graduate School, New York, New York, USA.
Numa RahmanImmunology Program, Memorial Sloan-Kettering Cancer Center, Gerstner Sloan-Kettering Graduate School, New York, New York, USA.
Matthew P StroutYale Cancer Center, Yale University School of Medicine, New Haven, Connecticut, USA.
Kevin D MillsThe Jackson Laboratory, Bar Harbor, Maine, USA.
Janet StavnezerDepartment of Microbiology & Physiological Systems, University of Massachusetts Medical School, Worcester, Massachusetts, USA.
Jayanta ChaudhuriImmunology Program, Memorial Sloan-Kettering Cancer Center, Gerstner Sloan-Kettering Graduate School, New York, New York, USA.
Memorial Sloan Kettering Cancer Center · USCornell University · USJackson Laboratory · USUniversity of Massachusetts Chan Medical School · USYale University · US

Funding

Mechanistic Elucidation of Class Switch Recombination and Somatic HypermutationR01AI072194 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI CHAUDHURI, JAYANTA · 2009 to 2025
$6.9M
MOLECULAR BASIS OF IMMUNOGLOBULIN HEAVY CHAIN SWITCHR01AI023283 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHRADER, CAROL E · 1985 to 2014
$5.8M
Homologous Recombination in Genome Stability and Tumor SuppressionR01CA138646 · NCI · JACKSON LABORATORY · PI MILLS, KEVIN D · 2009 to 2012
$1.4M
Regulation and Dysregulation of Antibody DiversificationK08CA140718 · NCI · YALE UNIVERSITY · PI STROUT, MATTHEW · 2009 to 2013
$872k
Function of the AID C terminus in Ig class switchingR21AI099988 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHRADER, CAROL E · 2012 to 2013
$443k
NCI NIH HHS 5 R01 CA138646-04NCI NIH HHS K08 CA140718NCI NIH HHS R01 CA138646NIAID NIH HHS 1R01AI072194NIAID NIH HHS R01 AI023283NIAID NIH HHS R01 AI072194NIAID NIH HHS R01AI23283NIAID NIH HHS R21 AI099908NIAID NIH HHS R21 AI099988
6 · The paper itself

Abstract

The ability of activation-induced cytidine deaminase (AID) to efficiently mediate class-switch recombination (CSR) is dependent on its phosphorylation at Ser38; however, the trigger that induces AID phosphorylation and the mechanism by which phosphorylated AID drives CSR have not been elucidated. Here we found that phosphorylation of AID at Ser38 was induced by DNA breaks. Conversely, in the absence of AID phosphorylation, DNA breaks were not efficiently generated at switch (S) regions in the immunoglobulin heavy-chain locus (Igh), consistent with a failure of AID to interact with the endonuclease APE1. Additionally, deficiency in the DNA-damage sensor ATM impaired the phosphorylation of AID at Ser38 and the interaction of AID with APE1. Our results identify a positive feedback loop for the amplification of DNA breaks at S regions through the phosphorylation- and ATM-dependent interaction of AID with APE1.

Indexed as

Feedback, PhysiologicalImmunoglobulin Class SwitchingAnimalsAtaxia Telangiectasia Mutated ProteinsB-LymphocytesCytidine DeaminaseDNA-(Apurinic or Apyrimidinic Site) LyaseDNA Breaks, Double-StrandedGene Expression RegulationImmunoglobulin Heavy ChainsMicePhosphorylationProtein BindingSerineSignal TransductionApex1 protein, mouseAtaxia Telangiectasia Mutated ProteinsAtm protein, mouseCytidine DeaminaseDNA-(Apurinic or Apyrimidinic Site) LyaseImmunoglobulin Heavy ChainsSerine

Identifiers

PMID24097111
PMCPMC4005274
OpenAlexW2089735518

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.