Evidence map›Paper›PMID 24096568›Full record

ArticleBreast cancer research and treatment2013

The molecular diversity of Luminal A breast tumors.

Giovanni Ciriello, Rileen Sinha, Katherine A Hoadley, Anders S Jacobsen, Boris Reva, Charles M Perou, Chris Sander, Nikolaus Schultz

Registry-linked trialAbstract read
In one paragraph

Article in Breast cancer research and treatment, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT04403984 (Investigation of the Prognostic Value of Genomic Alterations or Protein Expression in Patients With Operated Early Breast Cancer of Luminal A or Luminal B Subtypes), which is not on this map. Cited by 79 papers.

0numbers the graph read from it
0cells of the map it votes in
79citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT04403984 unknown statusnot on this map

Investigation of the Prognostic Value of Genomic Alterations or Protein Expression in Patients With Operated Early Breast Cancer of Luminal A or Luminal B Subtypes

TypeobservationalSponsorHellenic Cooperative Oncology GroupRan2013 to 2023Enrolled750ConditionsBreast Cancer
3 · Its place in the literature

Who cites it

79 citing papers in PubMed.

  1. Trial
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  7. Investigation of TMEM41A's function in breast cancer prognosis and its connection to immune cell infiltration.Clinical & translational oncology : official publication of the Federation of Spanish Oncology Societies and of the National Cancer Institute of Mexico · 2025
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19 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Giovanni CirielloComputational Biology Center, Memorial Sloan-Kettering Cancer Center, New York, NY, USA, ciriello@cbio.mskcc.org.
Rileen Sinha
Katherine A Hoadley
Anders S Jacobsen
Boris Reva
Charles M Perou
Chris Sander
Nikolaus Schultz

Funding

Tissue Procurement & PathologyP50CA058223 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KATHERINE A. HOADLEY · 1992 to 2026
$59.3M
Gene Expression Patterns in Human Tumors Identified Using Transcript SequencingU24CA143848 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI HAYES, DAVID N, PEROU, CHARLES M · 2009 to 2016
$20.8M
TR&D 3 - Network Guided Machine LearningP41GM103504 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI IDEKER, TREY · 2012 to 2024
$17.3M
MSKCC Center for Translational Cancer Genomic AnalysisU24CA143840 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI LADANYI, MARC, SANDER, CHRIS · 2009 to 2016
$11.5M
NCI NIH HHS P50 CA058223NCI NIH HHS P50-CA58223-09A1NCI NIH HHS U24 CA143840NCI NIH HHS U24-CA143840NCI NIH HHS U24 CA143848NCI NIH HHS U24-CA143848NIGMS NIH HHS P41 GM103504
6 · The paper itself

Abstract

Breast cancer is a collection of diseases with distinct molecular traits, prognosis, and therapeutic options. Luminal A breast cancer is the most heterogeneous, both molecularly and clinically. Using genomic data from over 1,000 Luminal A tumors from multiple studies, we analyzed the copy number and mutational landscape of this tumor subtype. This integrated analysis revealed four major subtypes defined by distinct copy-number and mutation profiles. We identified an atypical Luminal A subtype characterized by high genomic instability, TP53 mutations, and increased Aurora kinase signaling; these genomic alterations lead to a worse clinical prognosis. Aberrations of chromosomes 1, 8, and 16, together with PIK3CA, GATA3, AKT1, and MAP3K1 mutations drive the other subtypes. Finally, an unbiased pathway analysis revealed multiple rare, but mutually exclusive, alterations linked to loss of activity of co-repressor complexes N-Cor and SMRT. These rare alterations were the most prevalent in Luminal A tumors and may predict resistance to endocrine therapy. Our work provides for a further molecular stratification of Luminal A breast tumors, with potential direct clinical implications.

Indexed as

Breast NeoplasmsCarcinoma, Ductal, BreastClass I Phosphatidylinositol 3-KinasesDNA Copy Number VariationsDNA Mutational AnalysisDrug Resistance, NeoplasmFemaleGATA3 Transcription FactorGene DosageGene ExpressionGenomic InstabilityHumansKaplan-Meier EstimateMAP Kinase Kinase Kinase 1MutationPhosphatidylinositol 3-KinasesAKT1 protein, humanClass I Phosphatidylinositol 3-KinasesGATA3 protein, humanGATA3 Transcription FactorMAP3K1 protein, humanMAP Kinase Kinase Kinase 1Phosphatidylinositol 3-KinasesPIK3CA protein, humanProto-Oncogene Proteins c-aktTP53 protein, humanTumor Suppressor Protein p53

Identifiers

PMID24096568
PMCPMC3824397

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.