Evidence map›Paper›PMID 24096195›Full record

ArticleAnalytical biochemistry2014

Evaluation of quantitative performance of sequential immobilized metal affinity chromatographic enrichment for phosphopeptides.

Zeyu Sun, Karyn L Hamilton, Kenneth F Reardon

Abstract readEvaluation Study
In one paragraph

Article in Analytical biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. FeJournal of proteomics · 2022
    Article
  2. Review
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Zeyu SunDepartment of Chemical and Biological Engineering, Colorado State University, Fort Collins, CO 80523, USA.
Karyn L Hamilton
Kenneth F Reardon

Funding

Mechanisms of Exercise &Estrogen Induced CytoprotectionK02HL079333 · NHLBI · COLORADO STATE UNIVERSITY-FORT COLLINS · PI HAMILTON, KARYN L · 2005 to 2009
$486k
NHLBI NIH HHS K02 HL079333
6 · The paper itself

Abstract

We evaluated a sequential elution protocol from immobilized metal affinity chromatography (SIMAC) employing gallium-based immobilized metal affinity chromatography (IMAC) in conjunction with titanium dioxide-based metal oxide affinity chromatography (MOAC). The quantitative performance of this SIMAC enrichment approach, assessed in terms of repeatability, dynamic range, and linearity, was evaluated using a mixture composed of tryptic peptides from caseins, bovine serum albumin, and phosphopeptide standards. Although our data demonstrate the overall consistent performance of the SIMAC approach under various loading conditions, the results also revealed that the method had limited repeatability and linearity for most phosphopeptides tested, and different phosphopeptides were found to have different linear ranges. These data suggest that, unless additional strategies are used, SIMAC should be regarded as a semiquantitative method when used in large-scale phosphoproteomics studies in complex backgrounds.

Indexed as

Chromatography, AffinityAmino Acid SequenceAnimalsCaseinsCattleGalliumMolecular Sequence DataPhosphopeptidesSerum Albumin, BovineTandem Mass SpectrometryTitaniumTrypsinCaseinsGalliumPhosphopeptidesSerum Albumin, BovineTitaniumtitanium dioxideTrypsinAffinity chromatographyIMACMOACPhosphopeptidesProteomicsSIMAC

Identifiers

PMID24096195
PMCPMC3909987

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.