Evidence map›Paper›PMID 24095278›Full record

ArticleMolecular cell2013

Unusual noncanonical intron editing is important for tRNA splicing in Trypanosoma brucei.

Mary Anne T Rubio, Zdeněk Paris, Kirk W Gaston, Ian M C Fleming, Paul Sample, Christopher R Trotta, Juan D Alfonzo

Open access · bronzeAbstract read
In one paragraph

Article in Molecular cell, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Genomic Organization of Trypanosoma cruzi tRNA Genes.Genome biology and evolution · 2025
    Article
  3. Review
  4. tRNARNA (New York, N.Y.) · 2023
    Article
  5. The life and times of a tRNA.RNA (New York, N.Y.) · 2023
    Review
  6. Review
  7. Review
  8. Review
  9. Review
  10. From canonical to modified nucleotides: balancing translation and metabolism.Critical reviews in biochemistry and molecular biology · 2020
    Review
  11. Genome-wide profiling of RNA editing sites in sheep.Journal of animal science and biotechnology · 2019
    Article
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Mary Anne T RubioDepartment of Microbiology and The Center for RNA Biology, The Ohio State University, Columbus, OH 43210, USA.
Zdeněk Paris
Kirk W Gaston
Ian M C Fleming
Paul Sample
Christopher R Trotta
Juan D Alfonzo
The Ohio State University · USPTC Therapeutics (United States) · US

Funding

tRNA editing by deamination: Balancing affinity and specifictyR01GM084065 · NIGMS · OHIO STATE UNIVERSITY · PI ALFONZO, JUAN D · 2008 to 2021
$4.0M
NIGMS NIH HHS GM084065-06NIGMS NIH HHS R01 GM084065
6 · The paper itself

Abstract

In cells, tRNAs are synthesized as precursor molecules bearing extra sequences at their 5' and 3' ends. Some tRNAs also contain introns, which, in archaea and eukaryotes, are cleaved by an evolutionarily conserved endonuclease complex that generates fully functional mature tRNAs. In addition, tRNAs undergo numerous posttranscriptional nucleotide chemical modifications. In Trypanosoma brucei, the single intron-containing tRNA (tRNA(Tyr)GUA) is responsible for decoding all tyrosine codons; therefore, intron removal is essential for viability. Using molecular and biochemical approaches, we show the presence of several noncanonical editing events, within the intron of pre-tRNA(Tyr)GUA, involving guanosine-to-adenosine transitions (G to A) and an adenosine-to-uridine transversion (A to U). The RNA editing described here is required for proper processing of the intron, establishing the functional significance of noncanonical editing with implications for tRNA processing in the deeply divergent kinetoplastid lineage and eukaryotes in general.

Indexed as

RNA EditingRNA SplicingAmino Acid SequenceBase SequenceBlotting, NorthernEndoribonucleasesIntronsMolecular Sequence DataNucleic Acid ConformationProtozoan ProteinsReverse Transcriptase Polymerase Chain ReactionRNA InterferenceRNA PrecursorsRNA Processing, Post-TranscriptionalRNA, ProtozoanRNA, Transfer, TyrEndoribonucleasesProtozoan ProteinsRNA PrecursorsRNA, ProtozoanRNA, Transfer, Tyrsplicing endonuclease

Identifiers

PMID24095278
PMCPMC3825838
OpenAlexW2144214340

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.