Evidence map›Paper›PMID 24089553›Full record

ArticleJournal of virology2013

Cyclophilin A binds to the viral RNA and replication proteins, resulting in inhibition of tombusviral replicase assembly.

Nikolay Kovalev, Peter D Nagy

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 39 citations in OpenAlex.

  1. Secreted Protein VdCUE Modulates Virulence ofJournal of fungi (Basel, Switzerland) · 2025
    Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Cyclophilin A: a key player for etiological agent infection.Applied microbiology and biotechnology · 2021
    Review
  8. Host directed therapies: COVID-19 and beyond.Current research in pharmacology and drug discovery · 2021
    Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Article
  16. Article
  17. Implication of the WhiteflyFrontiers in plant science · 2016
    Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Nikolay KovalevDepartment of Plant Pathology, University of Kentucky, Lexington, Kentucky, USA.
Peter D Nagy
University of Kentucky · US

Funding

Mechanism of inhibition of +RNA virus replication by cyclophilinsR21AI096323 · NIAID · UNIVERSITY OF KENTUCKY · PI NAGY, PETER · 2011 to 2012
$378k
NIAID NIH HHS 1R21AI096323NIAID NIH HHS R21 AI096323
6 · The paper itself

Abstract

Replication of plus-stranded RNA viruses is greatly affected by numerous host-encoded proteins that act as restriction factors. Cyclophilins, which are a large family of cellular prolyl isomerases, have been found to inhibit Tomato bushy stunt tombusvirus (TBSV) replication in a Saccharomyces cerevisiae model based on genome-wide screens and global proteomics approaches. In this report, we further characterize single-domain cyclophilins, including the mammalian cyclophilin A and plant Roc1 and Roc2, which are orthologs of the yeast Cpr1p cyclophilin, a known inhibitor of TBSV replication in yeast. We found that recombinant CypA, Roc1, and Roc2 strongly inhibited TBSV replication in a cell-free replication assay. Additional in vitro studies revealed that CypA, Roc1, and Roc2 cyclophilins bound to the viral replication proteins, and CypA and Roc1 also bound to the viral RNA. These interactions led to inhibition of viral RNA recruitment, the assembly of the viral replicase complex, and viral RNA synthesis. A catalytically inactive mutant of CypA was also able to inhibit TBSV replication in vitro due to binding to the replication proteins and the viral RNA. Overexpression of CypA and its mutant in yeast or plant leaves led to inhibition of tombusvirus replication, confirming that CypA is a restriction factor for TBSV. Overall, the current work has revealed a regulatory role for the cytosolic single-domain Cpr1-like cyclophilins in RNA virus replication.

Indexed as

Arabidopsis ProteinsCyclophilin ACyclophilinsDown-RegulationHost-Pathogen InteractionsHumansNicotianaProtein BindingProtein Structure, TertiaryRNA-Dependent RNA PolymeraseRNA, ViralSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTombusvirusViral ProteinsVirus ReplicationArabidopsis ProteinsCPR1 protein, S cerevisiaeCyclophilin ACyclophilinsRNA-Dependent RNA PolymeraseRNA, ViralROC1 protein, ArabidopsisROC2 protein, ArabidopsisSaccharomyces cerevisiae ProteinsViral Proteins

Identifiers

PMID24089553
PMCPMC3838255
OpenAlexW2002333769

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.