Evidence map›Paper›PMID 24089548›Full record

ArticleJournal of virology2013

LINE-1 retrotransposable element DNA accumulates in HIV-1-infected cells.

R Brad Jones, Haihan Song, Yang Xu, Keith E Garrison, Anton A Buzdin, Naveed Anwar, Diana V Hunter, Shariq Mujib, Vesna Mihajlovic, Eric Martin and 8 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
6.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 70 citations in OpenAlex.

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  14. Virus-Induced Membrane Fusion in Neurodegenerative Disorders.Frontiers in cellular and infection microbiology · 2022
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 4 institutions in 4 countries.

R Brad JonesDepartment of Immunology, University of Toronto, Toronto, Ontario, Canada.
Haihan Song
Yang Xu
Keith E Garrison
Anton A Buzdin
Naveed Anwar
Diana V Hunter
Shariq Mujib
Vesna Mihajlovic
Eric Martin
Erika Lee
Monika Kuciak
Rui André Saraiva Raposo
Ardalan Bozorgzad
Duncan A Meiklejohn
Lishomwa C Ndhlovu
Douglas F Nixon
Mario A Ostrowski
University of Toronto · CAUniversity of California, San Francisco · USCentre National de la Recherche Scientifique · FRInstitute of Bioorganic Chemistry · RU

Funding

Virology CoreP30AI027763 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI STEVEN Grant DEEKS · 1988 to 2026
$93.6M
Human Endogenous Retroelements in HIV ImmunopathogenesisR01AI076059 · NIAID · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIXON, DOUGLAS F · 2009 to 2017
$3.9M
An endogenous retroelement vaccine against HIV-1R56AI084113 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI NIXON, DOUGLAS F · 2009 to 2009
$425k
NIAID NIH HHS AI076059NIAID NIH HHS AI084113NIAID NIH HHS P30 AI027763NIAID NIH HHS R01 AI076059NIAID NIH HHS R56 AI084113
6 · The paper itself

Abstract

Type 1 long-interspersed nuclear elements (L1s) are autonomous retrotransposable elements that retain the potential for activity in the human genome but are suppressed by host factors. Retrotransposition of L1s into chromosomal DNA can lead to genomic instability, whereas reverse transcription of L1 in the cytosol has the potential to activate innate immune sensors. We hypothesized that HIV-1 infection would compromise cellular control of L1 elements, resulting in the induction of retrotransposition events. Here, we show that HIV-1 infection enhances L1 retrotransposition in Jurkat cells in a Vif- and Vpr-dependent manner. In primary CD4(+) cells, HIV-1 infection results in the accumulation of L1 DNA, at least the majority of which is extrachromosomal. These data expose an unrecognized interaction between HIV-1 and endogenous retrotransposable elements, which may have implications for the innate immune response to HIV-1 infection, as well as for HIV-1-induced genomic instability and cytopathicity.

Indexed as

Long Interspersed Nucleotide ElementsCD4-Positive T-LymphocytesCell LineDNA, ViralEndogenous RetrovirusesHIV-1HIV InfectionsHumansvif Gene Products, Human Immunodeficiency Virusvpr Gene Products, Human Immunodeficiency VirusDNA, Viralvif Gene Products, Human Immunodeficiency Virusvif protein, Human immunodeficiency virus 1vpr Gene Products, Human Immunodeficiency Virusvpr protein, Human immunodeficiency virus 1

Identifiers

PMID24089548
PMCPMC3838212
OpenAlexW2146412218

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.