Evidence map›Paper›PMID 24088984›Full record

ArticleNature communications2013

Condensin I associates with structural and gene regulatory regions in vertebrate chromosomes.

Ji Hun Kim, Tao Zhang, Nicholas C Wong, Nadia Davidson, Jovana Maksimovic, Alicia Oshlack, William C Earnshaw, Paul Kalitsis, Damien F Hudson

Open access · bronzeAbstract read
In one paragraph

Article in Nature communications, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 52 papers.

0numbers the graph read from it
0cells of the map it votes in
52citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

52 citing papers in PubMed, 78 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Consistencies and contradictions in different polymer models of chromatin architecture.Computational and structural biotechnology journal · 2023
    Review
  8. Article
  9. Article
  10. SMC complexes: Lifting the lid on loop extrusion.Current opinion in cell biology · 2022
    Review
  11. Mitotic chromosomes.Seminars in cell & developmental biology · 2021
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. International journal of molecular sciences · 2020
    Article
  17. Article
  18. Article
  19. Article
  20. Condensin action and compaction.Current genetics · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 3 countries.

Ji Hun Kim1] Murdoch Childrens Research Institute, Royal Children's Hospital, Parkville, Melbourne, Victoria 3052, Australia [2] Department of Paediatrics, University of Melbourne, Parkville, Melbourne, Victoria 3052, Australia.
Tao Zhang
Nicholas C Wong
Nadia Davidson
Jovana Maksimovic
Alicia Oshlack
William C Earnshaw
Paul Kalitsis
Damien F Hudson
Murdoch Children's Research Institute · AURoyal Children's Hospital · AUUniversity of Melbourne · AUOlivia Newton-John Cancer Wellness & Research Centre · AUUniversity of Edinburgh · GB

Funding

Wellcome Trust 043189Wellcome Trust 073915Wellcome Trust 092076
6 · The paper itself

Abstract

The condensin complex is essential for correct packaging and segregation of chromosomes during mitosis and meiosis in all eukaryotes. To date, the genome-wide location and the nature of condensin-binding sites have remained elusive in vertebrates. Here we report the genome-wide map of condensin I in chicken DT40 cells. Unexpectedly, we find that condensin I binds predominantly to promoter sequences in mitotic cells. We also find a striking enrichment at both centromeres and telomeres, highlighting the importance of the complex in chromosome segregation. Taken together, the results show that condensin I is largely absent from heterochromatic regions. This map of the condensin I binding sites on the chicken genome reveals that patterns of condensin distribution on chromosomes are conserved from prokaryotes, through yeasts to vertebrates. Thus in three kingdoms of life, condensin is enriched on promoters of actively transcribed genes and at loci important for chromosome segregation.

Indexed as

GenomeAdenosine TriphosphatasesAnimalsBacteriaB-LymphocytesCell Line, TumorCentromereChickensChromosome MappingChromosome SegregationDNA-Binding ProteinsGene Expression RegulationHeterochromatinMitosisMultiprotein ComplexesPromoter Regions, GeneticAdenosine Triphosphatasescondensin complexesDNA-Binding ProteinsHeterochromatinMultiprotein ComplexesProtein Subunits

Identifiers

PMID24088984
PMCPMC4038772
OpenAlexW1967694634

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.