Evidence map›Paper›PMID 24086521›Full record

ArticlePloS one2013

The transcriptional regulator Np20 is the zinc uptake regulator in Pseudomonas aeruginosa.

Matthew L Ellison, John M Farrow, John Matthew Farrow, Whitney Parrish, Allison S Danell, Everett C Pesci

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.5field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 58 citations in OpenAlex.

  1. A genome-wide screen inJournal of bacteriology · 2026
    Article
  2. Cobalt mitigates zinc-starvation effects in Pseudomonas aeruginosa.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2026
    Article
  3. Pseudopaline-mediated zinc uptake byInfection and immunity · 2026
    Article
  4. Modelling host-pathogen interactions:Microbiology (Reading, England) · 2025
    Article
  5. Article
  6. Zinc homeostasis in Pseudomonas.Biometals : an international journal on the role of metal ions in biology, biochemistry, and medicine · 2023
    Review
  7. Article
  8. Article
  9. Virulence regulation of ZnFrontiers in veterinary science · 2023
    Article
  10. Article
  11. New insights about the EptA protein and its correlation with theCurrent research in microbial sciences · 2021
    Article
  12. Article
  13. Article
  14. Article
  15. Identification and Characterization ofJournal of bacteriology · 2021
    Article
  16. Review
  17. Strategies for Zinc Uptake inFrontiers in microbiology · 2021
    Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

  • Erratum issued
    Farrow, John Matthew 4th [corrected to Farrow, John M 3rd]
5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Matthew L EllisonDepartment of Microbiology and Immunology, East Carolina University, Greenville, North Carolina, United State of America ; Department of Biology and Chemistry, Morehead State University, Morehead, Kentucky, United State of America.
John M Farrow
John Matthew Farrow
Whitney Parrish
Allison S Danell
Everett C Pesci
East Carolina University · US

Funding

WKU Lead Faculty AwardP20GM103436 · NIGMS · UNIVERSITY OF LOUISVILLE · PI ERIC C ROUCHKA · 2012 to 2026
$60.1M
Studies on the Pseudomonas aeruginosa Cell-to-Cell Signal PQSR01AI076272 · NIAID · EAST CAROLINA UNIVERSITY · PI PESCI, EVERETT C · 2008 to 2017
$2.8M
Studies on the Pseudomonas aeruginosa Cell-to-Cell Signal PQSR56AI076272 · NIAID · EAST CAROLINA UNIVERSITY · PI PESCI, EVERETT C · 2014 to 2014
$245k
NIAID NIH HHS AI076272NIAID NIH HHS R01 AI076272NIAID NIH HHS R56 AI076272NIGMS NIH HHS 8P20GM103436-12
6 · The paper itself

Abstract

Zinc is essential for all bacteria, but excess amounts of the metal can have toxic effects. To address this, bacteria have developed tightly regulated zinc uptake systems, such as the ZnuABC zinc transporter which is regulated by the Fur-like zinc uptake regulator (Zur). In Pseudomonas aeruginosa, a Zur protein has yet to be identified experimentally, however, sequence alignment revealed that the zinc-responsive transcriptional regulator Np20, encoded by np20 (PA5499), shares high sequence identity with Zur found in other bacteria. In this study, we set out to determine whether Np20 was functioning as Zur in P. aeruginosa. Using RT-PCR, we determined that np20 (hereafter known as zur) formed a polycistronic operon with znuC and znuB. Mutant strains, lacking the putative znuA, znuB, or znuC genes were found to grow poorly in zinc deplete conditions as compared to wild-type strain PAO1. Intracellular zinc concentrations in strain PAO-Zur (Δzur) were found to be higher than those for strain PAO1, further implicating the zur as the zinc uptake regulator. Reporter gene fusions and real time RT-PCR revealed that transcription of znuA was repressed in a zinc-dependent manner in strain PAO1, however zinc-dependent transcriptional repression was alleviated in strain PAO-Zur, suggesting that the P. aeruginosa Zur homolog (ZurPA) directly regulates expression of znuA. Electrophoretic mobility shift assays also revealed that recombinant ZurPA specifically binds to the promoter region of znuA and does not bind in the presence of the zinc chelator N,N',N-tetrakis(2-pyridylmethyl) ethylenediamine (TPEN). Taken together, these data support the notion that Np20 is the P. aeruginosa Zur, which regulates the transcription of the genes encoding the high affinity ZnuABC zinc transport system.

Indexed as

Amino Acid SequenceBase SequenceCation Transport ProteinsComputational BiologyElectrophoretic Mobility Shift AssayEthylenediaminesMolecular Sequence DataPseudomonas aeruginosaReal-Time Polymerase Chain ReactionRegulatory Elements, TranscriptionalReverse Transcriptase Polymerase Chain ReactionSequence AlignmentSequence Analysis, DNASpecies SpecificityZincCation Transport ProteinsEthylenediaminesN,N,N',N'-tetrakis(2-pyridylmethyl)ethylenediamineZinc

Identifiers

PMID24086521
PMCPMC3781045
OpenAlexW1994829379

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.