Evidence map›Paper›PMID 24086479›Full record

ArticlePloS one2013

Identification of new drug targets and resistance mechanisms in Mycobacterium tuberculosis.

Thomas R Ioerger, Theresa O'Malley, Reiling Liao, Kristine M Guinn, Mark J Hickey, Nilofar Mohaideen, Kenan C Murphy, Helena I M Boshoff, Valerie Mizrahi, Eric J Rubin and 5 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed
11.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 250 citations in OpenAlex.

  1. Cryptotanshinone inhibitsVirulence · 2026
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  4. MmpS5-MmpL5 Transporters DeliverCurrent protein & peptide science · 2026
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  6. Thienopyrimidine amide analogs target MmpL3 inAntimicrobial agents and chemotherapy · 2025
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  7. Article
  8. Article
  9. Review
  10. Article
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  12. Chemical genetic interactions elucidate pathways controlling tuberculosis antibiotic efficacy during infection.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  13. TheMicrobiology spectrum · 2024
    Article
  14. Review
  15. Article
  16. Article
  17. Phase variation as a major mechanism of adaptation inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Review
  19. Deletion of Rv2571c confers resistance to arylamide compounds inAntimicrobial agents and chemotherapy · 2023
    Article
  20. Article

68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 7 institutions in 2 countries.

Thomas R IoergerDepartment of Computer Science and Engineering, Texas A&M University, College Station, Texas, United States of America.
Theresa O'Malley
Reiling Liao
Kristine M Guinn
Mark J Hickey
Nilofar Mohaideen
Kenan C Murphy
Helena I M Boshoff
Valerie Mizrahi
Eric J Rubin
Christopher M Sassetti
Clifton E Barry
David R Sherman
Tanya Parish
James C Sacchettini
Center for Infectious Disease Research · USTexas A&M University · USHarvard University · USInfectious Disease Research Institute · USNational Institute of Allergy and Infectious Diseases · USUniversity of Massachusetts Chan Medical School · USUniversity of Cape Town · ZA

Funding

Development Of New Chemotherapeutics For TuberculosisZIAAI000693 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI BARRY, CLIFTON · 2009 to 2025
$20.1M
The Cloning Protein Production, Crystallization, and X-ray Data Collection CoreP01AI068135 · NIAID · TEXAS A&M AGRILIFE RESEARCH · PI SACCHETTINI, JAMES C · 2006 to 2010
$13.2M
Structures of Mtb proteins conferring susceptibility to known Mtb inhibitorsU01GM094568 · NIGMS · TEXAS A&M UNIVERSITY · PI TERWILLIGER, THOMAS C. · 2010 to 2014
$6.0M
Howard Hughes Medical InstituteIntramural NIH HHSNIAID NIH HHS P01 AI068135NIGMS NIH HHS U01 GM094568NIGMS NIH HHS U01GM094568
6 · The paper itself

Abstract

Identification of new drug targets is vital for the advancement of drug discovery against Mycobacterium tuberculosis, especially given the increase of resistance worldwide to first- and second-line drugs. Because traditional target-based screening has largely proven unsuccessful for antibiotic discovery, we have developed a scalable platform for target identification in M. tuberculosis that is based on whole-cell screening, coupled with whole-genome sequencing of resistant mutants and recombineering to confirm. The method yields targets paired with whole-cell active compounds, which can serve as novel scaffolds for drug development, molecular tools for validation, and/or as ligands for co-crystallization. It may also reveal other information about mechanisms of action, such as activation or efflux. Using this method, we identified resistance-linked genes for eight compounds with anti-tubercular activity. Four of the genes have previously been shown to be essential: AspS, aspartyl-tRNA synthetase, Pks13, a polyketide synthase involved in mycolic acid biosynthesis, MmpL3, a membrane transporter, and EccB3, a component of the ESX-3 type VII secretion system. AspS and Pks13 represent novel targets in protein translation and cell-wall biosynthesis. Both MmpL3 and EccB3 are involved in membrane transport. Pks13, AspS, and EccB3 represent novel candidates not targeted by existing TB drugs, and the availability of whole-cell active inhibitors greatly increases their potential for drug discovery.

Indexed as

Antitubercular AgentsAspartic Acid EndopeptidasesBacterial ProteinsDrug DiscoveryDrug Evaluation, PreclinicalDrug Resistance, BacterialModels, MolecularMolecular StructureMycobacterium tuberculosisPolyketide SynthasesSequence Analysis, DNAAntitubercular AgentsAspartic Acid EndopeptidasesBacterial Proteinspolyketide synthase Pks13, Mycobacterium tuberculosisPolyketide Synthases

Identifiers

PMID24086479
PMCPMC3781026
OpenAlexW2160400589

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.