Evidence map›Paper›PMID 24086439›Full record

ArticlePloS one2013

Identification of proteins associated with polyhydroxybutyrate granules from Herbaspirillum seropedicae SmR1--old partners, new players.

Evandro F Tirapelle, Marcelo Müller-Santos, Michelle Z Tadra-Sfeir, Marco A S Kadowaki, Maria B R Steffens, Rose A Monteiro, Emanuel M Souza, Fabio O Pedrosa, Leda S Chubatsu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 32 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Pleiotropic Effects of PhaR Regulator inInternational journal of molecular sciences · 2024
    Article
  5. Review
  6. 3 Biotech · 2021
    Article
  7. Transcriptional Responses ofFrontiers in microbiology · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. PHB Biosynthesis Counteracts Redox Stress inFrontiers in microbiology · 2018
    Article
  14. Review
  15. Article
  16. A simple and efficient method for poly-3-hydroxybutyrate quantification in diazotrophic bacteria within 5 minutes using flow cytometry.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2017
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Evandro F TirapelleDepartamento de Bioquímica e Biologia Molecular, Universidade Federal do Paraná, Curitiba, Brazil.
Marcelo Müller-Santos
Michelle Z Tadra-Sfeir
Marco A S Kadowaki
Maria B R Steffens
Rose A Monteiro
Emanuel M Souza
Fabio O Pedrosa
Leda S Chubatsu
Universidade Federal do Paraná · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herbaspirillum seropedicae is a diazotrophic ß-Proteobacterium found associated with important agricultural crops. This bacterium produces polyhydroxybutyrate (PHB), an aliphatic polyester, as a carbon storage and/or source of reducing equivalents. The PHB polymer is stored as intracellular insoluble granules coated mainly with proteins, some of which are directly involved in PHB synthesis, degradation and granule biogenesis. In this work, we have extracted the PHB granules from H. seropedicae and identified their associated-proteins by mass spectrometry. This analysis allowed us to identify the main phasin (PhaP1) coating the PHB granule as well as the PHB synthase (PhbC1) responsible for its synthesis. A phbC1 mutant is impaired in PHB synthesis, confirming its role in H. seropedicae. On the other hand, a phaP1 mutant produces PHB granules but coated mainly with the secondary phasin (PhaP2). Furthermore, some novel proteins not previously described to be involved with PHB metabolism were also identified, bringing new possibilities to PHB function in H. seropedicae.

Indexed as

Bacterial ProteinsDNA-Binding ProteinsElectrophoresis, Polyacrylamide GelGene Expression Regulation, BacterialGenes, BacterialHerbaspirillumHydroxybutyratesMass SpectrometryBacterial ProteinsDNA-Binding ProteinsHydroxybutyratesPHAP protein, Bacteria

Identifiers

PMID24086439
PMCPMC3783465
OpenAlexW2019162032

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.