ArticleDNA research : an international journal for rapid publication of reports on genes and genomes2014
Next-generation survey sequencing and the molecular organization of wheat chromosome 6B.
Article in DNA research : an international journal for rapid publication of reports on genes and genomes, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.
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Who cites it
23 citing papers in PubMed, 50 citations in OpenAlex.
- Current status and future perspective of genomics-assisted breeding in wheat (Breeding science · 2026Article
- Overcoming Difficulties in Molecular Biological Analysis through a Combination of Genetic Engineering, Genome Editing, and Genome Analysis in HexaploidPlants (Basel, Switzerland) · 2023Review
- Genome-Wide Association Study in Bread Wheat Identifies Genomic Regions Associated with Grain Yield and Quality under Contrasting Water Availability.International journal of molecular sciences · 2022Article
- Fine structure and transcription dynamics of bread wheat ribosomal DNA loci deciphered by a multi-omics approach.The plant genome · 2022Article
- Molecular Markers Associated with Agro-Physiological Traits under Terminal Drought Conditions in Bread Wheat.International journal of molecular sciences · 2020Article
- Chromosome-based survey sequencing reveals the genome organization of wild wheat progenitor Triticum dicoccoides.Plant biotechnology journal · 2018Article
- Sequencing flow-sorted short arm of Haynaldia villosa chromosome 4V provides insights into its molecular structure and virtual gene order.BMC genomics · 2017Article
- Article
- Fluorescence chromosome banding and FISH mapping in perennial ryegrass, Lolium perenne L.BMC genomics · 2016Article
- Improvement of barley genome annotations by deciphering the Haruna Nijo genome.DNA research : an international journal for rapid publication of reports on genes and genomes · 2016Article
- Comprehensive molecular characterization of the α/β-gliadin multigene family in hexaploid wheat.Molecular genetics and genomics : MGG · 2016Article
- Identification and Comparative Analysis of microRNA in Wheat (Triticum aestivum L.) Callus Derived from Mature and Immature Embryos during In vitro Culture.Frontiers in plant science · 2016Article
- High-Throughput Sequencing Reveals Single Nucleotide Variants in Longer-Kernel Bread Wheat.Frontiers in plant science · 2016Article
- A high-resolution physical map integrating an anchored chromosome with the BAC physical maps of wheat chromosome 6B.BMC genomics · 2015Article
- Molecular organization and comparative analysis of chromosome 5B of the wild wheat ancestor Triticum dicoccoides.Scientific reports · 2015Article
- The physical map of wheat chromosome 5DS revealed gene duplications and small rearrangements.BMC genomics · 2015Article
- Characterization of repetitive DNA landscape in wheat homeologous group 4 chromosomes.BMC genomics · 2015Article
- New insights into the wheat chromosome 4D structure and virtual gene order, revealed by survey pyrosequencing.Plant science : an international journal of experimental plant biology · 2015Article
- Next-generation sequencing of flow-sorted wheat chromosome 5D reveals lineage-specific translocations and widespread gene duplications.BMC genomics · 2014Article
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Corrections and comments
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Authors and funding
16 authors at 6 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Common wheat (Triticum aestivum L.) is one of the most important cereals in the world. To improve wheat quality and productivity, the genomic sequence of wheat must be determined. The large genome size (∼17 Gb/1 C) and the hexaploid status of wheat have hampered the genome sequencing of wheat. However, flow sorting of individual chromosomes has allowed us to purify and separately shotgun-sequence a pair of telocentric chromosomes. Here, we describe a result from the survey sequencing of wheat chromosome 6B (914 Mb/1 C) using massively parallel 454 pyrosequencing. From the 4.94 and 5.51 Gb shotgun sequence data from the two chromosome arms of 6BS and 6BL, 235 and 273 Mb sequences were assembled to cover ∼55.6 and 54.9% of the total genomic regions, respectively. Repetitive sequences composed 77 and 86% of the assembled sequences on 6BS and 6BL, respectively. Within the assembled sequences, we predicted a total of 4798 non-repetitive gene loci with the evidence of expression from the wheat transcriptome data. The numbers and chromosomal distribution patterns of the genes for tRNAs and microRNAs in wheat 6B were investigated, and the results suggested a significant involvement of DNA transposon diffusion in the evolution of these non-protein-coding RNA genes. A comparative analysis of the genomic sequences of wheat 6B and monocot plants clearly indicated the evolutionary conservation of gene contents.
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