Evidence map›Paper›PMID 24084575›Full record

ArticleEuropean journal of human genetics : EJHG2014

The MLH1 c.-27C>A and c.85G>T variants are linked to dominantly inherited MLH1 epimutation and are borne on a European ancestral haplotype.

Chau-To Kwok, Ingrid P Vogelaar, Wendy A van Zelst-Stams, Arjen R Mensenkamp, Marjolijn J Ligtenberg, Robert W Rapkins, Robyn L Ward, Nicolette Chun, James M Ford, Uri Ladabaum and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
5.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Update on Lynch syndrome genomics.Familial cancer · 2016
    Review
  16. Review
  17. Review
  18. Article
  19. Milestones of Lynch syndrome: 1895-2015.Nature reviews. Cancer · 2015
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 3 countries.

Chau-To KwokAdult Cancer Program, Lowy Cancer Research Centre, Prince of Wales Clinical School, University of New South Wales, Sydney, NSW, Australia.
Ingrid P VogelaarDepartment of Human Genetics, Radboud University Medical Centre, Nijmegen, The Netherlands.
Wendy A van Zelst-StamsDepartment of Human Genetics, Radboud University Medical Centre, Nijmegen, The Netherlands.
Arjen R MensenkampDepartment of Human Genetics, Radboud University Medical Centre, Nijmegen, The Netherlands.
Marjolijn J Ligtenberg1] Department of Human Genetics, Radboud University Medical Centre, Nijmegen, The Netherlands [2] Department of Pathology, Radboud University Medical Centre, Nijmegen, The Netherlands.
Robert W RapkinsAdult Cancer Program, Lowy Cancer Research Centre, Prince of Wales Clinical School, University of New South Wales, Sydney, NSW, Australia.
Robyn L WardAdult Cancer Program, Lowy Cancer Research Centre, Prince of Wales Clinical School, University of New South Wales, Sydney, NSW, Australia.
Nicolette ChunProgram for Clinical Cancer Genetics, Departments of Medicine (Oncology) and Genetics, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
James M FordProgram for Clinical Cancer Genetics, Departments of Medicine (Oncology) and Genetics, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Uri LadabaumGastrointestinal Cancer Prevention Program, Division of Gastroenterology and Hepatology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Wendy C McKinnonDepartment of Medicine and Familial Cancer Program, Vermont Cancer Centre, University of Vermont, Burlington, VT, USA.
Marc S GreenblattDepartment of Medicine and Familial Cancer Program, Vermont Cancer Centre, University of Vermont, Burlington, VT, USA.
Megan P Hitchins1] Adult Cancer Program, Lowy Cancer Research Centre, Prince of Wales Clinical School, University of New South Wales, Sydney, NSW, Australia [2] Division of Oncology, Department of Medicine, Stanford University School of Medicine, Stanford, CA, USA.
Stanford University · USUNSW Sydney · AURadboud University Medical Center · NLRadboud University Nijmegen · NLUniversity of Vermont · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Germline mutations of the DNA mismatch repair genes MLH1, MSH2, MSH6 or PMS2, and deletions affecting the EPCAM gene adjacent to MSH2, underlie Lynch syndrome by predisposing to early-onset colorectal, endometrial and other cancers. An alternative but rare cause of Lynch syndrome is constitutional epimutation of MLH1, whereby promoter methylation and transcriptional silencing of one allele occurs throughout normal tissues. A dominantly transmitted constitutional MLH1 epimutation has been linked to an MLH1 haplotype bearing two single-nucleotide variants, NM_000249.2: c.-27C>A and c.85G>T, in a Caucasian family with Lynch syndrome from Western Australia. Subsequently, a second seemingly unrelated Caucasian Australian case with the same MLH1 haplotype and concomitant epimutation was reported. We now describe three additional, ostensibly unrelated, cancer-affected families of European heritage with this MLH1 haplotype in association with constitutional epimutation, bringing the number of index cases reported to five. Array-based genotyping in four of these families revealed shared haplotypes between individual families that extended across ≤2.6-≤6.4 megabase regions of chromosome 3p, indicating common ancestry. A minimal ≤2.6 megabase founder haplotype common to all four families was identified, which encompassed MLH1 and additional flanking genes and segregated with the MLH1 epimutation in each family. Our findings indicate that the MLH1 c.-27C>A and c.85G>T variants are borne on a European ancestral haplotype and provide conclusive evidence for its pathogenicity via a mechanism of epigenetic silencing of MLH1 within normal tissues. Additional descendants bearing this founder haplotype may exist who are also at high risk of developing Lynch syndrome-related cancers.

Indexed as

Epigenesis, GeneticGenes, DominantHaplotypesPoint MutationAdaptor Proteins, Signal TransducingAllelesCase-Control StudiesChromosomes, Human, Pair 3Colorectal Neoplasms, Hereditary NonpolyposisDNA Copy Number VariationsDNA MethylationDNA Mismatch RepairDNA Mutational AnalysisFemaleGene Expression RegulationHumansAdaptor Proteins, Signal TransducingMLH1 protein, humanMutL Protein Homolog 1Nuclear Proteins

Identifiers

PMID24084575
PMCPMC3992563
OpenAlexW2146141659

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.