Evidence map›Paper›PMID 24082142›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Prototype of an intertwined secondary-metabolite supercluster.

Philipp Wiemann, Chun-Jun Guo, Jonathan M Palmer, Relebohile Sekonyela, Clay C C Wang, Nancy P Keller

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 115 papers.

0numbers the graph read from it
0cells of the map it votes in
115citing papers in PubMed
15.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

115 citing papers in PubMed, 201 citations in OpenAlex.

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  10. Research Progress in Mutagenesis Techniques forMini reviews in medicinal chemistry · 2025
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  13. A Timeline of Biosynthetic Gene Cluster Discovery inJournal of fungi (Basel, Switzerland) · 2024
    Article
  14. Review
  15. Article
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  17. Naringin from Coffee Inhibits FoodborneMolecules (Basel, Switzerland) · 2023
    Article
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  20. Article

55 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Philipp WiemannDepartment of Medical Microbiology and Immunology, University of Wisconsin, Madison, WI 53706.
Chun-Jun Guo
Jonathan M Palmer
Relebohile Sekonyela
Clay C C Wang
Nancy P Keller
University of Wisconsin–Madison · USUniversity of Southern California · US

Funding

Mechanisms of an Aspergillus fumigatus virulence mutantR01AI065728 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KELLER, NANCY P · 2006 to 2017
$3.6M
NIAID NIH HHS R01 AI065728PHS HHS R01 AL065728-01
6 · The paper itself

Abstract

The hallmark trait of fungal secondary-metabolite gene clusters is well established, consisting of contiguous enzymatic and often regulatory gene(s) devoted to the production of a metabolite of a specific chemical class. Unexpectedly, we have found a deviation from this motif in a subtelomeric region of Aspergillus fumigatus. This region, under the control of the master regulator of secondary metabolism, LaeA, contains, in its entirety, the genetic machinery for three natural products (fumitremorgin, fumagillin, and pseurotin), where genes for fumagillin and pseurotin are physically intertwined in a single supercluster. Deletions of 29 adjoining genes revealed that fumagillin and pseurotin are coregulated by the supercluster-embedded regulatory gene with biosynthetic genes belonging to one of the two metabolic pathways in a noncontiguous manner. Comparative genomics indicates the fumagillin/pseurotin supercluster is maintained in a rapidly evolving region of diverse fungal genomes. This blended design confounds predictions from established secondary-metabolite cluster search algorithms and provides an expanded view of natural product evolution.

Indexed as

AlgorithmsAspergillus fumigatusCyclohexanesFatty Acids, UnsaturatedGenes, FungalIndenesMultigene FamilyPyrrolidinonesSequence Analysis, DNASesquiterpenesCyclohexanesFatty Acids, UnsaturatedfumagillinIndenespseurotinPyrrolidinonesSesquiterpenesbiosynthesiscluster evolutionFapRgene regulationZn(II)2Cys6 transcription factor

Identifiers

PMID24082142
PMCPMC3801025
OpenAlexW2078001104

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.