Evidence map›Paper›PMID 24082111›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Inter- and intrasubunit interactions between transmembrane helices in the open state of P2X receptor channels.

Gabriel Heymann, Jian Dai, Mufeng Li, Shai D Silberberg, Huan-Xiang Zhou, Kenton J Swartz

Open access · hybridAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Article
  3. Dilation of ion selectivity filters in cation channels.Trends in biochemical sciences · 2024
    Review
  4. Article
  5. Review
  6. Article
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  11. Two zinc-binding domains in the transporter AdcA fromThe Journal of biological chemistry · 2018
    Article
  12. Article
  13. Article
  14. On the permeation of large organic cations through the pore of ATP-gated P2X receptors.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  15. Article
  16. Review
  17. Article
  18. Article
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 2 countries.

Gabriel HeymannMolecular Physiology and Biophysics Section, Porter Neuroscience Research Center, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, MD 20892.
Jian Dai
Mufeng Li
Shai D Silberberg
Huan-Xiang Zhou
Kenton J Swartz
National Institute of Neurological Disorders and Stroke · USFlorida State University · USInstitute of Molecular Biology and Biophysics · RUNational Institutes of Health · US

Funding

Gating mechanisms and pharmacology of P2X receptor channelsZIANS003018 · NINDS · NATIONAL INSTITUTE OF NEUROLOGICAL DISORDERS AND STROKE · PI SWARTZ, KENTON · 2009 to 2025
$13.8M
THEORY OF PROTEIN/PROTEIN ASSOCIATIONR01GM058187 · NIGMS · FLORIDA STATE UNIVERSITY · PI ZHOU, HUAN-XIANG · 1998 to 2016
$3.7M
Modeling Crowding and Confinement of Cellular EnvironmentsR01GM088187 · NIGMS · FLORIDA STATE UNIVERSITY · PI ZHOU, HUAN-XIANG · 2010 to 2015
$1.6M
Intramural NIH HHSNIGMS NIH HHS GM058187NIGMS NIH HHS GM088187NIGMS NIH HHS R01 GM058187NIGMS NIH HHS R01 GM088187NINDS NIH HHS NS070954
6 · The paper itself

Abstract

P2X receptor channels open in response to the binding of extracellular ATP, a property that is essential for purinergic sensory signaling. Apo and ATP-bound X-ray structures of the detergent-solubilized zebrafish P2X4 receptor provide a blueprint for receptor mechanisms but unexpectedly showed large crevices between subunits within the transmembrane (TM) domain of the ATP-bound structure. Here we investigate both intersubunit and intrasubunit interactions between TM helices of P2X receptors in membranes using both computational and functional approaches. Our results suggest that intersubunit crevices found in the TM domain of the ATP-bound crystal structure are not present in membrane-embedded receptors but substantiate helix interactions within individual subunits and identify a hot spot at the internal end of the pore where both the gating and permeation properties of P2X receptors can be tuned. We propose a model for the structure of the open state that has stabilizing intersubunit interactions and that is compatible with available structural constraints from functional channels in membrane environments.

Indexed as

Models, MolecularAdenosine TriphosphateAnimalsCrystallography, X-RayProtein Structure, SecondaryProtein Structure, TertiaryReceptors, Purinergic P2X4ZebrafishAdenosine TriphosphateReceptors, Purinergic P2X4pore-opening mechanismtransmembrane intersubunit crevices

Identifiers

PMID24082111
PMCPMC3801033
OpenAlexW2097629649

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.