Evidence map›Paper›PMID 24082088›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2013

Hydration dynamics as an intrinsic ruler for refining protein structure at lipid membrane interfaces.

Chi-Yuan Cheng, Jobin Varkey, Mark R Ambroso, Ralf Langen, Songi Han

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

  1. A water-pinning hotspot drives templated tau aggregation.bioRxiv : the preprint server for biology · 2026
    Article
  2. Article
  3. Article
  4. Article
  5. Water-directed pinning is key to tau prion formation.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Review
  7. Article
  8. α-Synuclein and biological membranes: the danger of loving too much.Chemical communications (Cambridge, England) · 2023
    Review
  9. Article
  10. Article
  11. Article
  12. Missense Mutations Modify the Conformational Ensemble of theFrontiers in molecular biosciences · 2021
    Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Review
  18. Review
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  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Chi-Yuan ChengDepartment of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106.
Jobin Varkey
Mark R Ambroso
Ralf Langen
Songi Han

Funding

Structural Analysis of Protein-Membrane InteractionR01GM063915 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LANGEN, RALF · 2001 to 2012
$2.8M
Probing early protein aggregation mechanisms and their relationship to disease efDP2OD008702 · OD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI HAN, SONGI · 2011 to 2011
$2.3M
Structural Analysis of IAPP Fibril Formation and Membrane InteractionR01AG027936 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI LANGEN, RALF · 2007 to 2011
$1.5M
NIA NIH HHS AG027936NIA NIH HHS R01 AG027936NIGMS NIH HHS GM063915NIGMS NIH HHS R01 GM063915NIH HHS DP2 OD008702
6 · The paper itself

Abstract

Knowing the topology and location of protein segments at water-membrane interfaces is critical for rationalizing their functions, but their characterization is challenging under physiological conditions. Here, we debut a unique spectroscopic approach by using the hydration dynamics gradient found across the phospholipid bilayer as an intrinsic ruler for determining the topology, immersion depth, and orientation of protein segments in lipid membranes, particularly at water-membrane interfaces. This is achieved through the site-specific quantification of translational diffusion of hydration water using an emerging tool, (1)H Overhauser dynamic nuclear polarization (ODNP)-enhanced NMR relaxometry. ODNP confirms that the membrane-bound region of α-synuclein (αS), an amyloid protein known to insert an amphipathic α-helix into negatively charged phospholipid membranes, forms an extended α-helix parallel to the membrane surface. We extend the current knowledge by showing that residues 90-96 of bound αS, which is a transition segment that links the α-helix and the C terminus, adopt a larger loop than an idealized α-helix. The unstructured C terminus gradually threads through the surface hydration layers of lipid membranes, with the beginning portion residing within 5-15 Å above the phosphate level, and only the very end of C terminus surveying bulk water. Remarkably, the intrinsic hydration dynamics gradient along the bilayer normal extends to 20-30 Å above the phosphate level, as demonstrated with a peripheral membrane protein, annexin B12. ODNP offers the opportunity to reveal previously unresolvable structure and location of protein segments well above the lipid phosphate, whose structure and dynamics critically contribute to the understanding of functional versatility of membrane proteins.

Indexed as

Membranes, ArtificialMolecular Dynamics Simulationalpha-SynucleinHumansNuclear Magnetic Resonance, BiomolecularPhospholipidsProtein Structure, Tertiaryalpha-SynucleinMembranes, ArtificialPhospholipidselectron paramagnetic resonanceliposomesParkinson diseaseprotein-lipid interactionsite-directed spin labeling

Identifiers

PMID24082088
PMCPMC3800990

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.