Evidence map›Paper›PMID 24082032›Full record

ArticleG3 (Bethesda, Md.)2013

Detecting selection using time-series data of allele frequencies with multiple independent reference Loci.

Jo Nishino

Erratum issuedAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2013. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

1 author.

Jo NishinoCenter for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Research Organization of Information and Systems, Mishima, Shizuoka 411-8540, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recently, in 2013 Feder et al. proposed the frequency increment test (FIT), which evaluates natural selection at a single diallelic locus by the use of time-series data of allele frequencies. This test is unbiased under conditions of constant population size and no sampling noise. Here, we expand upon the FIT by introducing a test that explicitly allows for changes in population size by using information from independent reference loci. Various demographic models suggest that our proposed test is unbiased irrespective of fluctuations in population size when sampling noise can be ignored and that it has greater power to detect selection than the FIT if sufficient reference loci are used.

Indexed as

Gene FrequencyGenetics, PopulationModels, GeneticComputer SimulationPopulation DensitySelection, Geneticneutralitypopulation size fluctuationsreference lociselectiontime-series data of allele frequencies

Identifiers

PMID24082032
PMCPMC3852378

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.