Evidence map›Paper›PMID 24077665›Full record

ArticleOncotarget2014

Tissue-specific isoform switch and DNA hypomethylation of the pyruvate kinase PKM gene in human cancers.

Shruti Desai, Minming Ding, Bin Wang, Zhimin Lu, Qi Zhao, Kenna Shaw, W K Alfred Yung, John N Weinstein, Ming Tan, Jun Yao

Open access · hybridAbstract read
In one paragraph

Article in Oncotarget, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 164 citations in OpenAlex.

  1. Article
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  8. Article
  9. Prognostic Value of PKM2 Expression in de novo Metastatic Colorectal Cancer Patients.Asian Pacific journal of cancer prevention : APJCP · 2025
    Article
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51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Shruti DesaiMitchell Cancer Institute, Departments of Cell Biology and Neuroscience, University of South Alabama, Mobile, USA.
Minming DingDivision of Biostatistics, School of Public Health, The University of Texas - Houston Health Science Center, Houston, USA.
Bin WangDepartment of Genetics, The University of Texas M. D. Anderson Cancer Center, The University of Texas - Houston Health Science Center, Houston, USA.
Zhimin LuDepartment of Neuro-Oncology, The University of Texas M. D. Anderson Cancer Center, The University of Texas - Houston Health Science Center, Houston, USA.
Qi ZhaoLudwig Collaborative Laboratory, Department of Neurosurgery, Johns Hopkins University, 1550 Orleans Street, Baltimore, USA.
Kenna ShawDepartment of TCGA Genome Data Analysis Center, The University of Texas M. D. Anderson Cancer Center, The University of Texas - Houston Health Science Center, Houston, USA.
W K Alfred YungDepartment of Neuro-Oncology, The University of Texas M. D. Anderson Cancer Center, The University of Texas - Houston Health Science Center, Houston, USA.
John N WeinsteinDepartment of Bioinformatics and Computational Biology, The University of Texas M. D. Anderson Cancer Center, The University of Texas - Houston Health Science Center, Houston, USA.
Ming TanMitchell Cancer Institute, Departments of Cell Biology and Neuroscience, University of South Alabama, Mobile, USA.
Jun YaoDepartment of Neuro-Oncology, The University of Texas M. D. Anderson Cancer Center, The University of Texas - Houston Health Science Center, Houston, USA.
The University of Texas MD Anderson Cancer Center · USThe University of Texas Health Science Center at Houston · USUniversity of South Alabama · USUSA Mitchell Cancer Institute · US

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Fabien Delerue · 1985 to 2026
$290.8M
Integrative Pipeline for Analysis & Translational Application of TCGA Data (GDAC)U24CA143883 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI AKBANI, REHAN, MILLS, GORDON B. · 2009 to 2016
$10.6M
Glucose metabolism and ErbB2-mediated cancer progressionR01CA149646 · NCI · UNIVERSITY OF SOUTH ALABAMA · PI TAN, MING · 2011 to 2016
$1.4M
NCI NIH HHS P30 CA016672NCI NIH HHS R01 CA149646NCI NIH HHS R01CA149646NCI NIH HHS U24 CA143883NCI NIH HHS U24CA143883
6 · The paper itself

Abstract

The M2 isoform of pyruvate kinase (PKM2) plays an important role in aerobic glycolysis and is a mediator of the Warburg effect in tumors. It was previously thought that tumor cells switch expression of PKM from normal tissue-expressed PKM1 to tumor-specific PKM2 via an alternative splicing mechanism. This view was challenged by a recent report demonstrating that PKM2 is already the major PKM isoform expressed in many differentiated normal tissues. Here, through analyses on sixteen tumor types using the cancer genome atlas RNA-Seq and exon array datasets, we confirmed that isoform switch from PKM1 to PKM2 occurred in glioblastomas but not in other tumor types examined. Despite lacking of isoform switches, PKM2 expression was found to be increased in all cancer types examined, and correlated strongly to poor prognosis in head and neck cancers. We further demonstrated that elevated PKM2 expression correlated well with the hypomethylation status of intron 1 of the PKM gene in multiple cancer types, suggesting epigenetic regulation by DNA methylation as a major mechanism in controlling PKM transcription in tumors. Our study suggests that isoform switch of PKM1 to PKM2 in cancers is tissue-specific and targeting PKM2 activity in tumors remains a promising approach for clinical intervention of multiple cancer types.

Indexed as

DNA MethylationEpigenesis, GeneticBiomarkers, TumorBrain NeoplasmsCluster AnalysisDatabases, GeneticGene Expression ProfilingGene Expression Regulation, EnzymologicGene Expression Regulation, NeoplasticGenome-Wide Association StudyGlioblastomaHumansIntronsIsoenzymesKaplan-Meier EstimateNeoplasmsBiomarkers, TumorIsoenzymesPyruvate Kinase

Identifiers

PMID24077665
PMCPMC4226677
OpenAlexW2107576147

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.